View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21439_low_18 (Length: 230)

Name: NF21439_low_18
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21439_low_18
NF21439_low_18
[»] chr7 (4 HSPs)
chr7 (21-212)||(19509341-19509530)
chr7 (156-212)||(29229748-29229804)
chr7 (154-205)||(3094336-3094389)
chr7 (156-213)||(40992738-40992796)
[»] chr3 (2 HSPs)
chr3 (150-203)||(16867619-16867673)
chr3 (154-207)||(27786537-27786591)
[»] scaffold0514 (1 HSPs)
scaffold0514 (154-203)||(5825-5875)
[»] chr6 (6 HSPs)
chr6 (150-203)||(5069941-5069995)
chr6 (150-203)||(24252966-24253020)
chr6 (155-202)||(29400673-29400721)
chr6 (160-203)||(862907-862950)
chr6 (156-200)||(862829-862874)
chr6 (160-207)||(674131-674179)
[»] chr1 (8 HSPs)
chr1 (160-213)||(24419608-24419662)
chr1 (163-207)||(34890200-34890245)
chr1 (154-212)||(1609969-1610028)
chr1 (153-207)||(11900909-11900964)
chr1 (150-203)||(49166693-49166747)
chr1 (156-209)||(28437227-28437280)
chr1 (160-203)||(5700119-5700163)
chr1 (156-203)||(51171263-51171311)
[»] chr5 (3 HSPs)
chr5 (156-203)||(28351029-28351077)
chr5 (160-197)||(14751216-14751254)
chr5 (160-207)||(5865922-5865970)
[»] chr4 (6 HSPs)
chr4 (156-203)||(6372000-6372048)
chr4 (160-203)||(33508543-33508587)
chr4 (160-210)||(6371926-6371977)
chr4 (160-213)||(7277427-7277482)
chr4 (160-203)||(10065151-10065195)
chr4 (156-203)||(32125423-32125471)
[»] chr8 (3 HSPs)
chr8 (145-203)||(6590868-6590927)
chr8 (157-203)||(6649158-6649205)
chr8 (156-212)||(40737898-40737955)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 19509530 - 19509341
Alignment:
Q  21 gagaagaaacacacaataaatattaagaagtgaaaaattcaaaattagaacccgagatcaaacacttgcggttttcaacccgcgatcatactaataagag 120  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |    
T  19509530 gagaagaaacacacaataaatattaagaagtggaaaattcaaaattagaacccgagatcaaaaacttgcggttttcaacccgggatcatactaacaagtg 19509431  T
Q  121 tcataaataatttgtttaaacaatattctctctgatcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgac 212  Q
    ||||||||| |||||||||| ||||  ||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19509430 tcataaatattttgtttaaagaata--ctctctggtaacatttataagcaaaaaaaactttttaggtacattgaataactaatatatatgac 19509341  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 29229804 - 29229748
Alignment:
Q  156 tcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgac 212  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||||| ||| ||||    
T  29229804 tcatatttataagcaaaaacaactttttaggttcattgaataactaatgtatctgac 29229748  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 3094336 - 3094389
Alignment:
Q  154 gatcatatttataagcaaaaaa--cactttttaggtacattgaataactaatat 205  Q
    ||||||||||||||||||||||   ||||||||||| || ||||||||||||||    
T  3094336 gatcatatttataagcaaaaaaacaactttttaggttcactgaataactaatat 3094389  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 40992738 - 40992796
Alignment:
Q  156 tcatatttataagcaaaaaa-cactttttaggtacattgaataactaatatatatgact 213  Q
    |||||||||||||||||||| || |||||||||||||| ||||| |||| || ||||||    
T  40992738 tcatatttataagcaaaaaagcaatttttaggtacattaaataattaatgtacatgact 40992796  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 16867619 - 16867673
Alignment:
Q  150 ctctgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaat 203  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  16867619 ctctggtcacatttataagcaaaaaacaactttttaggtacattgaataactaat 16867673  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 27786591 - 27786537
Alignment:
Q  154 gatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatat 207  Q
    ||||| |||||||||||||| ||| |||||||||| ||||||||| |||||||||    
T  27786591 gatcacatttataagcaaaacacaactttttaggttcattgaatacctaatatat 27786537  T

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Target: scaffold0514 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 5825 - 5875
Alignment:
Q  154 gatcatatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  5825 gatcacatttataagcaaaaaatgactttttaggtacattgaataactaat 5875  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 5069941 - 5069995
Alignment:
Q  150 ctctgatcatatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||    
T  5069941 ctctgatcacatttataagcaaaaaacaactttttagatacattgaataattaat 5069995  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 24253020 - 24252966
Alignment:
Q  150 ctctgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaat 203  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  24253020 ctctggtcatatttataagcaaaaaataactttttaggtacattgaataattaat 24252966  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 29400673 - 29400721
Alignment:
Q  155 atcatatttataagcaaaaaaca-ctttttaggtacattgaataactaa 202  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  29400673 atcatatttataaacaaaaaacaactttttaagtacattgaataactaa 29400721  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 862950 - 862907
Alignment:
Q  160 atttataagcaaaaaacactttttaggtacattgaataactaat 203  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||    
T  862950 atttataagcaaaaaacattttttagatacattgaataattaat 862907  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 862829 - 862874
Alignment:
Q  156 tcatatttataagcaaaaaac-actttttaggtacattgaataact 200  Q
    |||||||||||||||||||   ||||||||||||||||||||||||    
T  862829 tcatatttataagcaaaaattgactttttaggtacattgaataact 862874  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 674179 - 674131
Alignment:
Q  160 atttataagcaaaaaacacttttt-aggtacattgaataactaatatat 207  Q
    |||||||||||||||||| ||||| || | |||||||||||||||||||    
T  674179 atttataagcaaaaaacaattttttagattcattgaataactaatatat 674131  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 24419662 - 24419608
Alignment:
Q  160 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgact 213  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||    
T  24419662 atttataagcaaaaaacaactttttaggtacattgaataattaatgtatctgact 24419608  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 34890200 - 34890245
Alignment:
Q  163 tataagcaaaaaaca-ctttttaggtacattgaataactaatatat 207  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||    
T  34890200 tataagcaaaaaacaactttttagatacattgaataactaatatat 34890245  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 1609969 - 1610028
Alignment:
Q  154 gatcatatttataagcaaaaaac-actttttaggtacattgaataactaatatatatgac 212  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||| |||| ||| ||||    
T  1609969 gatcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatctgac 1610028  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 11900964 - 11900909
Alignment:
Q  153 tgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatat 207  Q
    ||||||||||||||| |||||| || |||||||| |||||||||||| ||||||||    
T  11900964 tgatcatatttataaacaaaaaccaactttttagatacattgaataattaatatat 11900909  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 49166747 - 49166693
Alignment:
Q  150 ctctgatcatatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    ||||| ||| ||||||||||||||||| ||||||||| |||||||||||| ||||    
T  49166747 ctctggtcacatttataagcaaaaaacaactttttagttacattgaataattaat 49166693  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 28437227 - 28437280
Alignment:
Q  156 tcatatttataagcaaaaaacactttttaggtacattgaataactaatatatat 209  Q
    |||||||||||||||||||  ||||| ||||   ||||||||||||||||||||    
T  28437227 tcatatttataagcaaaaataactttataggcttattgaataactaatatatat 28437280  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 5700163 - 5700119
Alignment:
Q  160 atttataagcaaaaaaca-ctttttaggtacattgaataactaat 203  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||    
T  5700163 atttataagcaaaaaacaactttttaagtacattgaataattaat 5700119  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 51171263 - 51171311
Alignment:
Q  156 tcatatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    ||||||||||||||||||||| |||||||||||| |||| |||| ||||    
T  51171263 tcatatttataagcaaaaaacaactttttaggtatattgtataattaat 51171311  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 28351077 - 28351029
Alignment:
Q  156 tcatatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  28351077 tcatatttataagcaaaaaacaactttttagattcattgaataactaat 28351029  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 14751254 - 14751216
Alignment:
Q  160 atttataagcaaaaaaca-ctttttaggtacattgaata 197  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14751254 atttataagcaaaaaacaactttttaggtacattgaata 14751216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 5865970 - 5865922
Alignment:
Q  160 atttataagcaaaaaacac-tttttaggtacattgaataactaatatat 207  Q
    ||||||||||||||||||| ||||||||| |||||||||| | ||||||    
T  5865970 atttataagcaaaaaacacatttttaggttcattgaataattgatatat 5865922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 6372048 - 6372000
Alignment:
Q  156 tcatatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||||||    
T  6372048 tcatatttataagcaaaaaacaattttttaggtacatttaataactaat 6372000  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 33508543 - 33508587
Alignment:
Q  160 atttataagcaaaaaacactttt-taggtacattgaataactaat 203  Q
    |||||||||||||||||| |||| |||||||||||||||||||||    
T  33508543 atttataagcaaaaaacaattttttaggtacattgaataactaat 33508587  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 6371926 - 6371977
Alignment:
Q  160 atttataagcaaaaaac-actttttaggtacattgaataactaatatatatg 210  Q
    ||||||||||||||||  |||||||||||||||||||||| |||| ||||||    
T  6371926 atttataagcaaaaaatgactttttaggtacattgaataattaatgtatatg 6371977  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 7277427 - 7277482
Alignment:
Q  160 atttataagcaaaaaac--actttttaggtacattgaataactaatatatatgact 213  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||| ||| |||||    
T  7277427 atttataagcaaaaaaacaactttttaggttcattgaataactaatgtatctgact 7277482  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 10065195 - 10065151
Alignment:
Q  160 atttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||    
T  10065195 atttataagcaaaaaatgactttttaggtacattgaataattaat 10065151  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 32125471 - 32125423
Alignment:
Q  156 tcatatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    ||||||||||||||||||| | ||||||||||| ||||||||| |||||    
T  32125471 tcatatttataagcaaaaatctactttttaggttcattgaatatctaat 32125423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 6590927 - 6590868
Alignment:
Q  145 attctctctgatcatatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    |||| ||||| ||| ||||||||||||||||  |||||||||||||||||||||| ||||    
T  6590927 attccctctggtcacatttataagcaaaaaattactttttaggtacattgaataattaat 6590868  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 6649205 - 6649158
Alignment:
Q  157 catatttataagcaaaaaac-actttttaggtacattgaataactaat 203  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||    
T  6649205 catatttataagcaaaaaatgactttttaggtacattgaataattaat 6649158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 40737955 - 40737898
Alignment:
Q  156 tcatatttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgac 212  Q
    |||||||||||||||||||| | ||||| ||||||||||||||| |||| ||| ||||    
T  40737955 tcatatttataagcaaaaaatagttttttaggtacattgaataattaatgtatctgac 40737898  T

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