View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_low_2 (Length: 459)
Name: NF21439_low_2
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Original strand, 4174031 - 4174480
Alignment:
| Q |
13 |
aaaatatttataatgaaattgagactattacaaataatgttgatgcatttaatnnnnnnnttaactcaaatgaattatttcaaacataaaaacaactat- |
111 |
Q |
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| T |
4174031 |
aaaatatttataatgaaattgagactattacaaataatgctgatgcatttaataaaaaaattaactcaaatgaattatttcaaacataaaaacaactatg |
4174130 |
T |
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| Q |
112 |
---------------------acccttaactatttttcctgactctgtccttgacaatattgtttttaacataacacaccagtgggttctccgactgcga |
190 |
Q |
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| T |
4174131 |
tatatgtgtaaaattttcgccacccttaactatttttcctgactctgtccctgacaatattgtttctaacataacacaccagtgggttgtccgactgcga |
4174230 |
T |
|
| Q |
191 |
aatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtca |
290 |
Q |
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| T |
4174231 |
aatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtca |
4174330 |
T |
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| Q |
291 |
tcagagttgatggttgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttggagtcattgggtgccaag |
390 |
Q |
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| T |
4174331 |
tcagagttaatggctgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttggagtcattgggtgccaag |
4174430 |
T |
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| Q |
391 |
cgtctccaacgagtacaactctacctctagaaacaggtggacttatccat |
440 |
Q |
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| T |
4174431 |
cgtctccaacgagtacaactctacctctagaaacaggtggacttatccat |
4174480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 142 - 434
Target Start/End: Original strand, 4170187 - 4170476
Alignment:
| Q |
142 |
tgacaatattgtttttaacataacacaccagtgggttctccgactgcgaaatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaacca |
241 |
Q |
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||||||||||||| ||||| |||||||||| ||||| ||| ||||| || |||||||||||| |||||| ||||||||||||||||||||||| ||| |
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| T |
4170187 |
tgacaatattgttcctaacagaacacaccagcgggttatcccactgcaaagccgaacccacaagatttgcccgtatggttagtggaaatatgcgcggcca |
4170286 |
T |
|
| Q |
242 |
tctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatcagagttgatggttgcagcaagctttttagcaagaacgactgcatcctct |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||| | || | |||||||||||||||||||||||| ||||||||||| |
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| T |
4170287 |
tctttcattgccatatgatctaaaagcgtcttcgatagaagagtc---atcagaatcaattgctgcagcaagctttttagcaagaaccactgcatcctca |
4170383 |
T |
|
| Q |
342 |
agagcacaacatgctccttgcccaatatttggagtcattgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggactt |
434 |
Q |
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| T |
4170384 |
agagcacaacaagctccttgcccaagatttggagtcattgggtgccaagcatcaccaacgagtacaactctacctgcagaaacaggtggactt |
4170476 |
T |
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