View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_low_21 (Length: 214)
Name: NF21439_low_21
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 17196304 - 17196117
Alignment:
| Q |
10 |
gaagaatattgaaaaaacaagaaacctaaacaatttatgtacgacgttcaatgcaaaacttatgtaatatgaagatttattacttcacttccactcaaat |
109 |
Q |
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| T |
17196304 |
gaagaatattgcaaaaacaagaaacctaaacagtttatgtaagacgttcaatgcaaaacttatgtaatatgaagatttattacttcacttccactcaaat |
17196205 |
T |
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| Q |
110 |
tatgaagccaacatataagtttacttcacttcaactcaaaccgaagaaaaccatatttcgataagcagcagggaaagcaatagtacat |
197 |
Q |
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| T |
17196204 |
tatgaagccaacatataagtttacttcacttcaactcaaaccgaagaaaaccatgtttcgataagcagcagggaaagcaatagtacat |
17196117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 17184100 - 17184289
Alignment:
| Q |
10 |
gaagaatattgaaaaaacaagaaacctaaacaatttatgtacgacgttcaatgcaaaacttatgtaatatgaagattta----ttacttcacttccactc |
105 |
Q |
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| T |
17184100 |
gaagaatattgcaaaaacaagaaacctaaacagtttatgtaagacgttcaatgcaaaacttatgtaatatgaagatttaactattacttcacttccactc |
17184199 |
T |
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| Q |
106 |
aaattatgaagccaacatataagtttacttcacttcaactcaaaccgaagaaaaccatatttcgataagcagcagggaaagcaatagtacat |
197 |
Q |
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| T |
17184200 |
aaatta--aagccaacatataagtttacttcacttcaactcaaaccgaagaaaaccatgtttcgataagcagcagggaaagcaatagtacat |
17184289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 17193453 - 17193356
Alignment:
| Q |
37 |
aaacaatttatgtacgacgttcaatgcaaaacttatgtaatatgaagattta----ttacttcacttccactcaaattatgaagccaacatataagtt |
130 |
Q |
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| T |
17193453 |
aaacaatttatgtaagacgtttaatgcaaaacttatgtaatatgaagatttaattattacttcacttccactcaaattatgaagccaacatataagtt |
17193356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 17193298 - 17193254
Alignment:
| Q |
153 |
aagaaaaccatatttcgataagcagcagggaaagcaatagtacat |
197 |
Q |
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| T |
17193298 |
aagaaaaccatgtttcgataagcagcagggcaagcaatagtacat |
17193254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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