View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_low_7 (Length: 366)
Name: NF21439_low_7
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 360
Target Start/End: Complemental strand, 7063285 - 7062947
Alignment:
| Q |
27 |
tgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt |
126 |
Q |
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| T |
7063285 |
tgaataactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt |
7063186 |
T |
|
| Q |
127 |
attcatgattagaagagctttgagtttgatttacttttgacagtatttgtttgatttgggggatgtactacttgaaggagtggatttgtttttaaataaa |
226 |
Q |
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| T |
7063185 |
attcatgattagaagagctttgagtttgatttacttttgacagtacttgtttgatttgggggatgtactacttgaaggagtggatttgtttttaaataaa |
7063086 |
T |
|
| Q |
227 |
tgattctgtcaacgttgtctcnnnnnnnattaagagatgtggttgtattaaaaagacaaatgtattttgtggtcttctaagtttaagcttg-----tatc |
321 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7063085 |
tgattctgtcaacgttgtctctttttttattaagagatgtggttgtattaaaaagacaaatgtattttgtggtcttctaagtttaagcttgtatcatatc |
7062986 |
T |
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| Q |
322 |
attcatattagttgggagaaaacaccatttgacattcat |
360 |
Q |
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| T |
7062985 |
attcatattagttgggagaaaacaccatttcacattcat |
7062947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7058809 - 7058725
Alignment:
| Q |
1 |
gaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgctt |
85 |
Q |
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| T |
7058809 |
gaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatcaacgtagtagtcgaataaaagtgctt |
7058725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7014042 - 7013973
Alignment:
| Q |
1 |
gaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt |
70 |
Q |
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| T |
7014042 |
gaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt |
7013973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7029400 - 7029331
Alignment:
| Q |
1 |
gaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt |
70 |
Q |
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| T |
7029400 |
gaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt |
7029331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 323
Target Start/End: Complemental strand, 7013717 - 7013567
Alignment:
| Q |
182 |
ttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgttgtc----tcnnnnnnnattaagagatgtggttgtattaa |
277 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| | |||||||||||| | |||||||| |
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| T |
7013717 |
ttgggggctgtactacttgaaggagtggattagtttttaaataaatcattctgtcaacattgtctttttatttgtatattaagagatgttgatgtattaa |
7013618 |
T |
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| Q |
278 |
aaagacaa----atgtattttgtggtcttctaagttt-aagcttgtatcat |
323 |
Q |
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| T |
7013617 |
aaagacaaatgtatgtattttggggtcttctaagtttgacgcttgtatcat |
7013567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 323
Target Start/End: Complemental strand, 7029075 - 7028925
Alignment:
| Q |
182 |
ttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgttgtc----tcnnnnnnnattaagagatgtggttgtattaa |
277 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| | |||||||||||| | |||||||| |
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| T |
7029075 |
ttgggggctgtactacttgaaggagtggattagtttttaaataaatcattctgtcaacattgtctttttatttgtatattaagagatgttgatgtattaa |
7028976 |
T |
|
| Q |
278 |
aaagacaa----atgtattttgtggtcttctaagttt-aagcttgtatcat |
323 |
Q |
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|||||||| |||||||||| |||||||||||||| | ||||||||||| |
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| T |
7028975 |
aaagacaaatgtatgtattttggggtcttctaagtttgacgcttgtatcat |
7028925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 7058379 - 7058318
Alignment:
| Q |
181 |
tttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgtt |
242 |
Q |
| |
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| T |
7058379 |
tttgggggttgtcctacttgaaggagtggattagtttttaaataaatgattctgtcaacgtt |
7058318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 7029245 - 7029204
Alignment:
| Q |
90 |
tttatattggaatggttaaagtttaaatggtattagtattca |
131 |
Q |
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| T |
7029245 |
tttatgttggaatggttaaagtttagatggtattagtattca |
7029204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 7056716 - 7056680
Alignment:
| Q |
189 |
atgtactacttgaaggagtggatttgtttttaaataa |
225 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
7056716 |
atgtactacttgaaggagtggattagtttttaaataa |
7056680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 7010869 - 7010836
Alignment:
| Q |
192 |
tactacttgaaggagtggatttgtttttaaataa |
225 |
Q |
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| T |
7010869 |
tactacttgaaggagtggattagtttttaaataa |
7010836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 7013887 - 7013846
Alignment:
| Q |
90 |
tttatattggaatggttaaagtttaaatggtattagtattca |
131 |
Q |
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||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
7013887 |
tttatgttgaaatggttaaagtttagatggtattagtattca |
7013846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 7026227 - 7026194
Alignment:
| Q |
192 |
tactacttgaaggagtggatttgtttttaaataa |
225 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
7026227 |
tactacttgaaggagtggattagtttttaaataa |
7026194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 7058657 - 7058608
Alignment:
| Q |
90 |
tttatattggaatggttaaagtttaaatggtattagtattcatgattaga |
139 |
Q |
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| T |
7058657 |
tttatattggaatggttgaagtttagcttgtattaggattcatgattaga |
7058608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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