View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2143_high_6 (Length: 339)
Name: NF2143_high_6
Description: NF2143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2143_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 35354518 - 35354751
Alignment:
| Q |
1 |
caaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
35354518 |
caaatattgttcactgcactagtatattatataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacag |
35354617 |
T |
|
| Q |
101 |
taatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcgttctcatcaccattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
35354618 |
caatattgcatgctggaccagtggagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcactctcatcaccattc |
35354717 |
T |
|
| Q |
201 |
ttcaattgttactgagcctatcacttgtatgaac |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
35354718 |
ttcaattgttactgagcctatcacttgtatgaac |
35354751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 35369663 - 35369896
Alignment:
| Q |
1 |
caaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacag |
100 |
Q |
| |
|
||||| |||||||||||||| |||| || ||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
35369663 |
caaattttgttcactgcactgttatactacataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacag |
35369762 |
T |
|
| Q |
101 |
taatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcgttctcatcaccattc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| || ||||| |
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| T |
35369763 |
caatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattc |
35369862 |
T |
|
| Q |
201 |
ttcaattgttactgagcctatcacttgtatgaac |
234 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| |
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|
| T |
35369863 |
ttcaattgtcactgagcctgtcacttgtatgaac |
35369896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 35379022 - 35379255
Alignment:
| Q |
1 |
caaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacag |
100 |
Q |
| |
|
||||| |||||||||| ||| ||||||| ||||| |||| | ||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| |
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|
| T |
35379022 |
caaatgttgttcactgtactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacag |
35379121 |
T |
|
| Q |
101 |
taatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcgttctcatcaccattc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| || ||||| |
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|
| T |
35379122 |
caatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattc |
35379221 |
T |
|
| Q |
201 |
ttcaattgttactgagcctatcacttgtatgaac |
234 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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|
| T |
35379222 |
ttcaattgtcactgagcctatcacttgtatgaac |
35379255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 35380684 - 35380727
Alignment:
| Q |
271 |
tatataatatagacatgaaagtttgataaataacattcaaaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35380684 |
tatataatatagacatgaaagtttgataaataacattcaaaatt |
35380727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 19630713 - 19630480
Alignment:
| Q |
1 |
caaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacag |
100 |
Q |
| |
|
||||||||||| ||||||||| | |||||| ||||| ||||||||||| || |||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19630713 |
caaatattgttgactgcactaaccttctatatactatacacaatatttcctatggctgctaacttaccatggtggagaacagatggtgtggttcttacag |
19630614 |
T |
|
| Q |
101 |
taatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcgttctcatcaccattc |
200 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||| |
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| T |
19630613 |
ctctcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatactctcgttaccattctcatcatcattc |
19630514 |
T |
|
| Q |
201 |
ttcaattgttactgagcctatcacttgtatgaac |
234 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |
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|
| T |
19630513 |
ttcaattgtcaccgagcctatcacttgtatgaac |
19630480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 19684084 - 19684317
Alignment:
| Q |
1 |
caaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacag |
100 |
Q |
| |
|
|||||||||||||||||| || | | ||||||| |||| |||||||||||| || | || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
19684084 |
caaatattgttcactgcattaatgttttatatactttacacgatatttcctatggctgccaacttaccatggtggagaacagatggtgtgattcttacag |
19684183 |
T |
|
| Q |
101 |
taatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcgttctcatcaccattc |
200 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| | |||||| || ||||| |
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|
| T |
19684184 |
ctatcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatattctcgttaccattctcaccatcattc |
19684283 |
T |
|
| Q |
201 |
ttcaattgttactgagcctatcacttgtatgaac |
234 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||| |
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|
| T |
19684284 |
ttcaattgtcactgaacctatcactggtatgaac |
19684317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 2258558 - 2258460
Alignment:
| Q |
114 |
tggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcgttctcatcaccattcttcaattgttac |
212 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||| |||||||||||||| |||| || || ||| | |||| ||||||||| |||||||| |||||||| |
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|
| T |
2258558 |
tggaccagtggagtttctttactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac |
2258460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 2280553 - 2280450
Alignment:
| Q |
109 |
catgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcgttctcatcaccattcttcaattg |
208 |
Q |
| |
|
||||||||| |||| || ||| | || |||||| |||| |||||||||||||| |||| || || ||| | |||| ||||||||| |||||||| |||| |
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|
| T |
2280553 |
catgctggagcagttgaatttctttattattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattg |
2280454 |
T |
|
| Q |
209 |
ttac |
212 |
Q |
| |
|
|||| |
|
|
| T |
2280453 |
ttac |
2280450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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