View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2143_low_1 (Length: 520)
Name: NF2143_low_1
Description: NF2143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2143_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 3324023 - 3324523
Alignment:
| Q |
18 |
caaaacaatgattatcatgctattttttcatgtttgagaattgaaaagcacacctctgcttaattaattcttcaagatgatctgatatgcatccaataaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324023 |
caaaacaatgattatcatgctattttttcatgtttgagaattgaaaagcacacctctgcttaattaattcttcaagatgatctgatatgcatccaataaa |
3324122 |
T |
|
| Q |
118 |
cttttcaatgaattcatagcaggataatattttttcctcaaacagaagcccttcagtctgcttcaaatgcaaaaatagcttcgacacttcagattaaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3324123 |
cttttcaatgaattcatagcaggataatattttttcctcaaacagaagcccttcagtctgcttcaaatacaaaaatagcttcgacacttcagattaaaag |
3324222 |
T |
|
| Q |
218 |
catatcacatgcccgacaagtgttccaacaccgacacaacgcttttacatgtataatcagttctattttctcaaattattactaaagtctgcatgttagt |
317 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
3324223 |
tatatcacatgtccgacaagtgttccaacaccgacacaacgccgttacatg--taatcagttctattttctcaaattattactgaagtctacatgttagt |
3324320 |
T |
|
| Q |
318 |
atcagtgtcgtgtttgacgtttgtgccgatgtttaatttattgtcatgtgcataa--------aatacaacaatacttgtatgcaaaatttaatggtgaa |
409 |
Q |
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| T |
3324321 |
atcagtgtcgtgtttgacgtttgtgccgatatttaatttattgtcatgtgcataatatgaatcaatacaacaatacttgtatgcaaaatttaatggtgaa |
3324420 |
T |
|
| Q |
410 |
aagagaatgttacccttttatatgcatcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctcttcat |
509 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3324421 |
aagagaatattacccttttatatgcatcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctcttctt |
3324520 |
T |
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| Q |
510 |
ctc |
512 |
Q |
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||| |
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| T |
3324521 |
ctc |
3324523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 8013863 - 8013924
Alignment:
| Q |
272 |
aatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtttg |
333 |
Q |
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||||| || |||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
8013863 |
aatcacttatattttttcaaattattactagtgtctacatgttagtatcagtgtcgtgtttg |
8013924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 1116428 - 1116368
Alignment:
| Q |
271 |
taatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtt |
331 |
Q |
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|||||| ||| |||||||||||||||||| || |||| ||||||||| ||||||| ||||| |
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| T |
1116428 |
taatcacttcaattttctcaaattattaccaatgtctacatgttagtgtcagtgttgtgtt |
1116368 |
T |
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