View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2143_low_2 (Length: 448)
Name: NF2143_low_2
Description: NF2143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2143_low_2 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 77027 - 76583
Alignment:
| Q |
1 |
aagcacaaaaaatgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77027 |
aagcacaaaaaatgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaa |
76928 |
T |
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| Q |
101 |
tggagattccaatttaattaaacactttaattaatgtttttgggcttaatgtatgtatatgatggaatgnnnnnnncaattcatgaccaaatacagagta |
200 |
Q |
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| T |
76927 |
tggagattccaatttaattaaacactttaattaatgtttttgggcttaatgtat----atgatggaatgaaaaaaacaattcatgaccaaatacagagta |
76832 |
T |
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| Q |
201 |
tatagccttacaaaaactgaaattcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaatttttatgaatattctcataag |
300 |
Q |
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| T |
76831 |
tataaccttacaaaaactgaaattcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaacttttatgaatattctcataag |
76732 |
T |
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| Q |
301 |
atccatatacaccatttcaactcacttattgaaaaatgtagctagaaaaacaaaaattagtatat-gtgtat---------------aataatatataca |
384 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
76731 |
atccatgtacaccatttcaactcacttattgaaaaatgtagctagaaaaacaaaaattagtatatagattattaaaattgatatgtgtataatatataca |
76632 |
T |
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| Q |
385 |
taccaattcattgccaaggttcatggcagcatcttggtaggtagttttt |
433 |
Q |
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| T |
76631 |
taccaattcattgccaaggttcatggcagcatcttggtaggtagttttt |
76583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 40889257 - 40889701
Alignment:
| Q |
1 |
aagcacaaaaaatgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889257 |
aagcacaaaaaatgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaa |
40889356 |
T |
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| Q |
101 |
tggagattccaatttaattaaacactttaattaatgtttttgggcttaatgtatgtatatgatggaatgnnnnnnncaattcatgaccaaatacagagta |
200 |
Q |
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| T |
40889357 |
tggagattccaatttaattaaacactttaattaatgtttttgggcttaatgtat----atgatggaatgaaaaaaacaattcatgaccaaatacagagta |
40889452 |
T |
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| Q |
201 |
tatagccttacaaaaactgaaattcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaatttttatgaatattctcataag |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40889453 |
tataaccttacaaaaactgaaattcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaacttttatgaatattctcataag |
40889552 |
T |
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| Q |
301 |
atccatatacaccatttcaactcacttattgaaaaatgtagctagaaaaacaaaaattagtatat-gtgtat---------------aataatatataca |
384 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
40889553 |
atccatgtacaccatttcaactcacttattgaaaaatgtagctagaaaaacaaaaattagtatatagattattaaaattgatatgtgtataatatataca |
40889652 |
T |
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| Q |
385 |
taccaattcattgccaaggttcatggcagcatcttggtaggtagttttt |
433 |
Q |
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| T |
40889653 |
taccaattcattgccaaggttcatggcagcatcttggtaggtagttttt |
40889701 |
T |
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