View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2143_low_4 (Length: 396)
Name: NF2143_low_4
Description: NF2143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2143_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 75 - 395
Target Start/End: Original strand, 35380732 - 35381071
Alignment:
| Q |
75 |
ttaattatgtttaatgaataattaaagagctttgacgccttattatat-------------------acaccttgttatgtcaaagtaacataaaatttc |
155 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35380732 |
ttaattatgtttaatgaataattaaagagttttgacgccttattatattattgattaactaaccatgacaccttgttatgtcaaagtaacataaaatttc |
35380831 |
T |
|
| Q |
156 |
atttctttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatctt |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35380832 |
atttctttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatctt |
35380931 |
T |
|
| Q |
256 |
ccgtggctgcattgtatggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactt |
355 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35380932 |
ccgtggctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaactcctctcttactt |
35381031 |
T |
|
| Q |
356 |
tcccattttgaagtatctctcatacacaccatcgtaagtt |
395 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
35381032 |
tcccattttaaagtatctctcatacacaccatcgtaagtt |
35381071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 161 - 396
Target Start/End: Original strand, 35354831 - 35355066
Alignment:
| Q |
161 |
tttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtg |
260 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
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| T |
35354831 |
tttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtg |
35354930 |
T |
|
| Q |
261 |
gctgcattgtatggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca |
360 |
Q |
| |
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|||||| | ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35354931 |
gctgcactatatggctatgtctttttcattgatttcatgaacaacatgggtcattgcaactttgagttcattcctaagaaactcctctcttactttccca |
35355030 |
T |
|
| Q |
361 |
ttttgaagtatctctcatacacaccatcgtaagttc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
35355031 |
ttttgaagtatctctcatacacaccatcgtaagttc |
35355066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 164 - 395
Target Start/End: Original strand, 35370278 - 35370509
Alignment:
| Q |
164 |
gacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtggct |
263 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || |||||| |
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| T |
35370278 |
gacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct |
35370377 |
T |
|
| Q |
264 |
gcattgtatggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattt |
363 |
Q |
| |
|
||| | ||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| | |
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| T |
35370378 |
gcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaat |
35370477 |
T |
|
| Q |
364 |
tgaagtatctctcatacacaccatcgtaagtt |
395 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
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| T |
35370478 |
tgaagtatctctcttacacaccatcgtaagtt |
35370509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 199 - 395
Target Start/End: Original strand, 19684519 - 19684715
Alignment:
| Q |
199 |
catattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtggctgcattgtatggctatatattttacattgatttcat |
298 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||||||| || ||||| |||| |||||||||||| ||||| |||||||| ||||| || |
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|
| T |
19684519 |
catatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggttgcattgtatggttatatcttttacatcgattttat |
19684618 |
T |
|
| Q |
299 |
gaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
395 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
19684619 |
gaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccccaattgaagtatctcacatacacaccatcgtaagtt |
19684715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 163 - 395
Target Start/End: Complemental strand, 19630344 - 19630111
Alignment:
| Q |
163 |
tgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttga-caacattgttcatcaataaatcttccgtgg |
261 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| ||||||| ||||||||| ||||||||| |||| ||||| ||||| | || ||||| || | | |
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|
| T |
19630344 |
tgacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattg |
19630245 |
T |
|
| Q |
262 |
ctgcattgtatggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccat |
361 |
Q |
| |
|
|||| ||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | |
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| T |
19630244 |
ctgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttcccct |
19630145 |
T |
|
| Q |
362 |
tttgaagtatctctcatacacaccatcgtaagtt |
395 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
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| T |
19630144 |
attgaagtatctctcgtacacaccatcgtaagtt |
19630111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 9267668 - 9267634
Alignment:
| Q |
40 |
cctaaaacgacatacaattgggacggagggagtaa |
74 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
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|
| T |
9267668 |
cctaaagcgacatacaattgggacggagggagtaa |
9267634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
| Q |
284 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
341 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
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|
| T |
2251396 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2251453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
| Q |
284 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
341 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
|
|
| T |
2256801 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2256744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 30087756 - 30087716
Alignment:
| Q |
43 |
aaaacgacatacaatt-gggacggagggagtaattaattat |
82 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
30087756 |
aaaacgtcatacaatttgggacggagggagtaattaattat |
30087716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 32642647 - 32642679
Alignment:
| Q |
41 |
ctaaaacgacatacaattgggacggagggagta |
73 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
32642647 |
ctaaagcgacatacaattgggacggagggagta |
32642679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 5443910 - 5443943
Alignment:
| Q |
40 |
cctaaaacgacatacaattgggacggagggagta |
73 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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|
| T |
5443910 |
cctaaaacgacatacaattgggacggaggaagta |
5443943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 2619594 - 2619630
Alignment:
| Q |
40 |
cctaaaacgacatacaa-ttgggacggagggagtaat |
75 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2619594 |
cctaaaacgacatacaatttgggacggagggagtaat |
2619630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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