View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2143_low_5 (Length: 352)
Name: NF2143_low_5
Description: NF2143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2143_low_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 55505983 - 55505655
Alignment:
| Q |
14 |
acatacagcttgcatgacattgtcaaccaaaattaatgatagaactagactaatagcccaaagaatgtatataagtaattaatctattttcactctctat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55505983 |
acatacagcttgcatgacattgtcaaccaaaattaatgatagaactagactaatagcccaaagaatgtatataagtaattaatctatttttactctcta- |
55505885 |
T |
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| Q |
114 |
tattctctacaagaaagatcaaagatggaacggagaaaacttggatcctcccattttctttagcaacaagacattgtaacattcaaagagagtaagacat |
213 |
Q |
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| T |
55505884 |
---------caagaaagatcaaagatggaacggagaaaacttggatcctcccattttctttagcaacaagacattgtaacattcaaagagagtaagacat |
55505794 |
T |
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| Q |
214 |
gattttaaaacccttgcactagaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaagg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55505793 |
gattttaaaacccttgcactagaaatgatgaatccaagtacactagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaagg |
55505694 |
T |
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| Q |
314 |
agaggatctgaaccctcataatttatggattatcattgc |
352 |
Q |
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| T |
55505693 |
agaggatctgaaccctcataatttatggattatcattgc |
55505655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 49087024 - 49086918
Alignment:
| Q |
24 |
tgcatgacattgtcaaccaaaattaatgatagaactagactaatagcccaaagaatgtatataag---taattaatctattttcactctctattattctc |
120 |
Q |
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| T |
49087024 |
tgcatgacattgccagccaacattaatgacaaaactagactaatattctaaagaatttatataagatataattaagatatgtt--ccctctattattctc |
49086927 |
T |
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| Q |
121 |
tacaagaaa |
129 |
Q |
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||||||||| |
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| T |
49086926 |
tacaagaaa |
49086918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 234 - 348
Target Start/End: Complemental strand, 43996037 - 43995923
Alignment:
| Q |
234 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggagaggatctgaaccctcata |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43996037 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggagaggatccaaaccctcata |
43995938 |
T |
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| Q |
334 |
atttatggattatca |
348 |
Q |
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| T |
43995937 |
atctatggattatca |
43995923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 43633890 - 43633961
Alignment:
| Q |
234 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaa |
305 |
Q |
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| T |
43633890 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaa |
43633961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 43633825 - 43633878
Alignment:
| Q |
14 |
acatacagcttgcatgacattgtcaaccaaaattaatgatagaactagactaat |
67 |
Q |
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| T |
43633825 |
acatacagcttgcatgacattgtcaaccaaaattaatgatagaactatactaat |
43633878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 43996102 - 43996049
Alignment:
| Q |
14 |
acatacagcttgcatgacattgtcaaccaaaattaatgatagaactagactaat |
67 |
Q |
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| T |
43996102 |
acatacagcttgcatgacattgtcaaccaaaattaatgatagaactatactaat |
43996049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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