View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2143_low_6 (Length: 340)
Name: NF2143_low_6
Description: NF2143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2143_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 55 - 269
Target Start/End: Complemental strand, 6824141 - 6823927
Alignment:
| Q |
55 |
tatatcaattgaaagaggaattgagaagcatacaccaaggttacttctagtaggacactctttgcattgaatacaattaacccacatcatatcagttcca |
154 |
Q |
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| T |
6824141 |
tatatcaattgaaagaggaattgagaagcatacaccaaggttacttctagtaggacactctttgcattgaatacaattaacccacatcatatcagttcca |
6824042 |
T |
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| Q |
155 |
gtatccacttgcaaataataatcctttgacggagttccaattccaattttggcataataaagcctacaatcacaaattcacacaatttcaaaatcaatca |
254 |
Q |
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| T |
6824041 |
gtatccacttgcaaataataatcctttgacggagttccaattccaattttcgcataataaagcctacaatcacaaattgacacaatttcaaaatcaatca |
6823942 |
T |
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| Q |
255 |
ccaaattcttcaacc |
269 |
Q |
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| T |
6823941 |
ccaaattcttcaacc |
6823927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 6824186 - 6824158
Alignment:
| Q |
14 |
atatactacataggtcaaaaacaattctt |
42 |
Q |
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| T |
6824186 |
atatactacataggtcaaaaacaattctt |
6824158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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