View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2143_low_8 (Length: 278)
Name: NF2143_low_8
Description: NF2143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2143_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 46455905 - 46455756
Alignment:
| Q |
1 |
cggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtggcggtgatcgtgttcttcttttgggtgct |
100 |
Q |
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| T |
46455905 |
cggtggaggtggtgaatgaactggtggtgaaggagaatgcacaggaggtggtgaggattgaactggtggcggcggtgatcgtgttcttcttttgggtgct |
46455806 |
T |
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| Q |
101 |
tcattatgaggatcatcctcaattggtggttctgcttgaggtgtagaagg |
150 |
Q |
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| T |
46455805 |
tcattatgaggatcatcctcaattggtggttctgcttcaggtgtagaagg |
46455756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 46455687 - 46455642
Alignment:
| Q |
219 |
ttggggtttgcgaaggtgtaggttgcggttgtggcttaggcactga |
264 |
Q |
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| T |
46455687 |
ttggggtttgcgaaggtgtaggttgcggttgtggcttaggcactga |
46455642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 46456267 - 46456197
Alignment:
| Q |
2 |
ggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtgg |
72 |
Q |
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| T |
46456267 |
ggtggaggaggtgaatgaactggtggtggtggagaatgtactggtggaggaggggaatgaaccggtggtgg |
46456197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 46456048 - 46455975
Alignment:
| Q |
5 |
ggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtggcggtga |
78 |
Q |
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| T |
46456048 |
ggaggaggtgagtgaacaggtggtggtggagaatgaactggtggtggtggggagtgaactggtggaggaggtga |
46455975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 46456009 - 46455933
Alignment:
| Q |
2 |
ggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtggcggtga |
78 |
Q |
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| T |
46456009 |
ggtggtggtggggagtgaactggtggaggaggtgagtgaacgggaggtggtggagagtgcactggtggtggtggtga |
46455933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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