View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2143_low_9 (Length: 276)

Name: NF2143_low_9
Description: NF2143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2143_low_9
NF2143_low_9
[»] chr5 (4 HSPs)
chr5 (13-256)||(7472880-7473130)
chr5 (13-255)||(30441941-30442186)
chr5 (51-253)||(9044285-9044490)
chr5 (89-171)||(40163917-40163996)
[»] chr3 (5 HSPs)
chr3 (13-256)||(19881506-19881752)
chr3 (55-253)||(53972723-53972924)
chr3 (55-186)||(37982961-37983092)
chr3 (210-253)||(37982835-37982878)
chr3 (224-256)||(31685543-31685575)
[»] chr7 (3 HSPs)
chr7 (51-256)||(43070815-43071023)
chr7 (224-256)||(48849391-48849423)
chr7 (224-256)||(1262569-1262601)
[»] chr2 (4 HSPs)
chr2 (13-253)||(12742171-12742414)
chr2 (55-256)||(23348417-23348621)
chr2 (51-252)||(18354740-18354950)
chr2 (55-215)||(10328462-10328627)
[»] scaffold0596 (1 HSPs)
scaffold0596 (55-256)||(1134-1338)
[»] chr6 (1 HSPs)
chr6 (223-253)||(10092955-10092985)
[»] scaffold0035 (1 HSPs)
scaffold0035 (223-256)||(35541-35574)
[»] chr8 (1 HSPs)
chr8 (223-256)||(14677630-14677663)
[»] chr4 (1 HSPs)
chr4 (223-255)||(29862969-29863001)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 7472880 - 7473130
Alignment:
Q  13 catcaatggacatattggtgcgtttgnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctat 112  Q
    |||||||||||||||||||| |||||         || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7472880 catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 7472979  T
Q  113 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga-----gatttagg--atatatgtata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||  |||||| ||||    
T  7472980 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatata 7473079  T
Q  206 gcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcg 256  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||    
T  7473080 gtagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcg 7473130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 30441941 - 30442186
Alignment:
Q  13 catcaatggacatattggtgcgtttgnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctat 112  Q
    |||||||||||||||||||| |||||         |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  30441941 catcaatggacatattggtgtgtttgaaaaaaaaataaacatatgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctat 30442040  T
Q  113 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||  |||||     
T  30442041 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagt 30442138  T
Q  208 atcatcttcaacacacctggctgatacgatgccgcagacgacaacggc 255  Q
    | |||||||||||||  |||||||||||||||||||||||||||||||    
T  30442139 agcatcttcaacacatatggctgatacgatgccgcagacgacaacggc 30442186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 51 - 253
Target Start/End: Complemental strand, 9044490 - 9044285
Alignment:
Q  51 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 150  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9044490 acatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 9044391  T
Q  151 gtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcaga 245  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | |||||||||||||| ||||||||||||||| |||||    
T  9044390 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacttggctgatacgatgctgcaga 9044293  T
Q  246 cgacaacg 253  Q
    ||||||||    
T  9044292 cgacaacg 9044285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
Q  89 ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttag 171  Q
    ||||||||| || ||||||||||| |||||||||   |||||| | ||||||||| ||| || ||||||||||||||||||||    
T  40163996 ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag 40163917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 19881506 - 19881752
Alignment:
Q  13 catcaatggacatattggtgcgtttgnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctat 112  Q
    |||||||||||||||||||| |||||          ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19881506 catcaatggacatattggtgtgtttgaaaaaaaaaaaaacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 19881605  T
Q  113 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||  |||||     
T  19881606 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagt 19881703  T
Q  208 atcatcttcaacacacctggctgatacgatgccgcagacgacaacggcg 256  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  19881704 agcatcttcaacacacctggctgatacgatgccgcagacgacaacggcg 19881752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 55 - 253
Target Start/End: Original strand, 53972723 - 53972924
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53972723 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 53972822  T
Q  155 tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac 249  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | |||||||||||||| |||||||||||||||||||||||||    
T  53972823 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacttggctgatacgatgccgcagacgac 53972920  T
Q  250 aacg 253  Q
    ||||    
T  53972921 aacg 53972924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 37983092 - 37982961
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37983092 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 37982993  T
Q  155 tggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||    
T  37982992 tggaataacaaagttagggaaaagttacagga 37982961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 37982878 - 37982835
Alignment:
Q  210 catcttcaacacacctggctgatacgatgccgcagacgacaacg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37982878 catcttcaacacacctggctgatacgatgccgcagacgacaacg 37982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 31685575 - 31685543
Alignment:
Q  224 ctggctgatacgatgccgcagacgacaacggcg 256  Q
    |||||||||||||||||||||||||||||||||    
T  31685575 ctggctgatacgatgccgcagacgacaacggcg 31685543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 43070815 - 43071023
Alignment:
Q  51 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 150  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43070815 acatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 43070914  T
Q  151 gtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcaga 245  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||    
T  43070915 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacctggctgatacgatgccgcaga 43071012  T
Q  246 cgacaacggcg 256  Q
    |||||||||||    
T  43071013 cgacaacggcg 43071023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 48849391 - 48849423
Alignment:
Q  224 ctggctgatacgatgccgcagacgacaacggcg 256  Q
    |||||||||||||||||||||||||||||||||    
T  48849391 ctggctgatacgatgccgcagacgacaacggcg 48849423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 1262601 - 1262569
Alignment:
Q  224 ctggctgatacgatgccgcagacgacaacggcg 256  Q
    |||||||||||||||||||| ||||||||||||    
T  1262601 ctggctgatacgatgccgcatacgacaacggcg 1262569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 12742414 - 12742171
Alignment:
Q  13 catcaatggacatattggtgcgtttgnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctat 112  Q
    |||||||||||||||||||| |||||         || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12742414 catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 12742315  T
Q  113 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||  |||||     
T  12742314 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagt 12742217  T
Q  208 atcatcttcaacacacctggctgatacgatgccgcagacgacaacg 253  Q
    | |||||||||||||||| |||||||||||||||||||||||||||    
T  12742216 agcatcttcaacacaccttgctgatacgatgccgcagacgacaacg 12742171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 55 - 256
Target Start/End: Original strand, 23348417 - 23348621
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348417 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 23348516  T
Q  155 tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac 249  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  23348517 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacctggctgatacgatgccgcagacgac 23348614  T
Q  250 aacggcg 256  Q
    |||||||    
T  23348615 aacggcg 23348621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 51 - 252
Target Start/End: Original strand, 18354740 - 18354950
Alignment:
Q  51 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 150  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18354740 acatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 18354839  T
Q  151 gtaatggaataacaaagttagggaaaagttacagga-----gatttagg----atatatgtatagcatcatcttcaacacacctggctgatacgatgccg 241  Q
    |||||||||||||||||||||||||||| |||||||     ||||||||    |||||| ||||| | ||||||||||||||||| ||||||||| ||||    
T  18354840 gtaatggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccg 18354939  T
Q  242 cagacgacaac 252  Q
    ||||| |||||    
T  18354940 cagacaacaac 18354950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 10328462 - 10328627
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10328462 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 10328561  T
Q  155 tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatctt 215  Q
    |||||||||||||||||||||||| |||| ||     |||||||||||||| ||||| | ||||||    
T  10328562 tggaataacaaagttagggaaaagatacatgaacaacgatttaggatatatatatagtagcatctt 10328627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 55 - 256
Target Start/End: Complemental strand, 1338 - 1134
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1338 atgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 1239  T
Q  155 tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac 249  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  1238 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacctggctgatacgatgccgcagacgac 1141  T
Q  250 aacggcg 256  Q
    |||||||    
T  1140 aacggcg 1134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 253
Target Start/End: Complemental strand, 10092985 - 10092955
Alignment:
Q  223 cctggctgatacgatgccgcagacgacaacg 253  Q
    |||||||||||||||||||||||||||||||    
T  10092985 cctggctgatacgatgccgcagacgacaacg 10092955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 35574 - 35541
Alignment:
Q  223 cctggctgatacgatgccgcagacgacaacggcg 256  Q
    ||||||||||||||||||||| ||||||||||||    
T  35574 cctggctgatacgatgccgcaaacgacaacggcg 35541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 14677630 - 14677663
Alignment:
Q  223 cctggctgatacgatgccgcagacgacaacggcg 256  Q
    ||||||||||||||||| ||||||||||||||||    
T  14677630 cctggctgatacgatgctgcagacgacaacggcg 14677663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 29862969 - 29863001
Alignment:
Q  223 cctggctgatacgatgccgcagacgacaacggc 255  Q
    ||||||||||||||||||||||| |||||||||    
T  29862969 cctggctgatacgatgccgcagatgacaacggc 29863001  T

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