View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_high_1 (Length: 627)

Name: NF21440_high_1
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_high_1
NF21440_high_1
[»] chr2 (37 HSPs)
chr2 (18-614)||(23856158-23856757)
chr2 (479-547)||(11750244-11750312)
chr2 (18-84)||(20428759-20428825)
chr2 (479-540)||(23857028-23857090)
chr2 (479-546)||(1297121-1297189)
chr2 (479-547)||(42182612-42182680)
chr2 (479-546)||(1296366-1296433)
chr2 (479-546)||(15774189-15774256)
chr2 (479-546)||(24933823-24933890)
chr2 (479-546)||(36237618-36237685)
chr2 (479-540)||(18821235-18821296)
chr2 (479-539)||(20432373-20432434)
chr2 (479-540)||(27178649-27178710)
chr2 (490-546)||(9275584-9275640)
chr2 (479-546)||(12725613-12725681)
chr2 (120-265)||(20592634-20592781)
chr2 (479-544)||(29512357-29512423)
chr2 (497-546)||(29719451-29719500)
chr2 (479-546)||(22301868-22301935)
chr2 (497-547)||(22560565-22560615)
chr2 (479-544)||(29559420-29559486)
chr2 (497-546)||(9276328-9276377)
chr2 (489-546)||(11007228-11007285)
chr2 (490-547)||(18174667-18174724)
chr2 (479-540)||(11751073-11751135)
chr2 (497-543)||(15902125-15902171)
chr2 (489-547)||(18174096-18174154)
chr2 (479-545)||(23343766-23343832)
chr2 (497-546)||(9540336-9540385)
chr2 (497-546)||(19918720-19918769)
chr2 (479-543)||(24121291-24121356)
chr2 (479-539)||(27177898-27177959)
chr2 (479-547)||(8542545-8542612)
chr2 (497-541)||(15902885-15902929)
chr2 (479-543)||(24754995-24755059)
chr2 (497-541)||(29513150-29513194)
chr2 (497-541)||(36238733-36238777)
[»] chr1 (44 HSPs)
chr1 (489-619)||(10121477-10121608)
chr1 (479-539)||(45818007-45818067)
chr1 (105-220)||(16572401-16572518)
chr1 (479-547)||(25469084-25469152)
chr1 (479-547)||(28181519-28181587)
chr1 (479-546)||(30932794-30932861)
chr1 (497-547)||(30663974-30664024)
chr1 (479-544)||(4439207-4439271)
chr1 (490-547)||(8988546-8988603)
chr1 (479-547)||(25468495-25468564)
chr1 (479-543)||(49680796-49680861)
chr1 (479-543)||(7558435-7558499)
chr1 (479-547)||(36389761-36389829)
chr1 (483-546)||(13262823-13262886)
chr1 (497-547)||(168894-168944)
chr1 (490-540)||(10120780-10120830)
chr1 (497-547)||(34309228-34309278)
chr1 (497-546)||(169626-169675)
chr1 (479-544)||(4433848-4433912)
chr1 (497-542)||(9778975-9779020)
chr1 (479-539)||(17171917-17171977)
chr1 (479-547)||(30663344-30663412)
chr1 (488-547)||(13263514-13263573)
chr1 (479-546)||(46909361-46909428)
chr1 (489-547)||(46812185-46812243)
chr1 (479-543)||(11704810-11704875)
chr1 (479-540)||(37852509-37852570)
chr1 (479-546)||(7406230-7406298)
chr1 (479-546)||(8987775-8987843)
chr1 (479-546)||(25733179-25733247)
chr1 (479-547)||(28182070-28182137)
chr1 (479-521)||(12760761-12760804)
chr1 (477-536)||(26118657-26118716)
chr1 (497-543)||(7559201-7559247)
chr1 (479-540)||(17172667-17172729)
chr1 (479-540)||(24991955-24992017)
chr1 (497-547)||(27256710-27256760)
chr1 (489-547)||(32038473-32038531)
chr1 (497-547)||(34308477-34308527)
chr1 (479-540)||(36390372-36390434)
chr1 (479-539)||(13142673-13142734)
chr1 (479-540)||(19171764-19171825)
chr1 (480-540)||(19172580-19172639)
chr1 (497-541)||(47967866-47967910)
[»] chr5 (33 HSPs)
chr5 (479-619)||(38056779-38056921)
chr5 (21-89)||(26698029-26698097)
chr5 (21-89)||(26967761-26967829)
chr5 (479-543)||(29087911-29087975)
chr5 (479-546)||(4084866-4084933)
chr5 (479-545)||(29046015-29046081)
chr5 (557-619)||(18676819-18676881)
chr5 (479-547)||(235577-235646)
chr5 (479-540)||(38057599-38057660)
chr5 (479-539)||(234687-234747)
chr5 (479-547)||(17071791-17071859)
chr5 (479-542)||(22212981-22213044)
chr5 (479-547)||(236926-236995)
chr5 (497-546)||(6476789-6476838)
chr5 (479-547)||(17071209-17071278)
chr5 (479-547)||(19128755-19128824)
chr5 (479-547)||(28705876-28705945)
chr5 (479-547)||(34600248-34600315)
chr5 (479-546)||(1554081-1554148)
chr5 (479-541)||(7632080-7632143)
chr5 (479-539)||(237826-237887)
chr5 (501-546)||(10554555-10554600)
chr5 (479-539)||(19359689-19359750)
chr5 (497-546)||(27364485-27364534)
chr5 (479-539)||(14478907-14478967)
chr5 (498-546)||(28705170-28705218)
chr5 (479-547)||(33471086-33471154)
chr5 (479-539)||(43510218-43510278)
chr5 (479-541)||(1281821-1281884)
chr5 (479-541)||(2313933-2313995)
chr5 (479-540)||(10555310-10555371)
chr5 (501-541)||(1283503-1283543)
chr5 (111-151)||(26731700-26731740)
[»] chr4 (45 HSPs)
chr4 (112-476)||(21211792-21212149)
chr4 (18-89)||(8938225-8938296)
chr4 (479-547)||(47688477-47688545)
chr4 (479-547)||(30573707-30573775)
chr4 (479-539)||(53772794-53772854)
chr4 (479-546)||(11939440-11939507)
chr4 (480-544)||(599302-599366)
chr4 (479-546)||(26147031-26147099)
chr4 (480-545)||(7841781-7841844)
chr4 (490-540)||(52871296-52871346)
chr4 (481-546)||(1465309-1465374)
chr4 (479-547)||(20774178-20774247)
chr4 (479-546)||(142523-142591)
chr4 (499-547)||(9365814-9365862)
chr4 (479-541)||(53773590-53773653)
chr4 (489-539)||(2444369-2444419)
chr4 (497-547)||(8247701-8247751)
chr4 (497-547)||(8265366-8265416)
chr4 (501-547)||(16903641-16903687)
chr4 (497-547)||(53732440-53732490)
chr4 (479-541)||(55000674-55000736)
chr4 (479-547)||(8248518-8248587)
chr4 (479-547)||(8266183-8266252)
chr4 (497-546)||(47785798-47785847)
chr4 (479-543)||(2446163-2446226)
chr4 (105-248)||(30914781-30914925)
chr4 (488-540)||(42882686-42882738)
chr4 (479-565)||(7841530-7841617)
chr4 (487-546)||(9365164-9365223)
chr4 (480-547)||(47687898-47687964)
chr4 (496-547)||(55001438-55001489)
chr4 (498-541)||(55976172-55976215)
chr4 (497-543)||(2182523-2182569)
chr4 (497-543)||(19551050-19551096)
chr4 (479-540)||(31329722-31329784)
chr4 (501-543)||(43146650-43146692)
chr4 (497-547)||(56262483-56262533)
chr4 (497-546)||(19080390-19080439)
chr4 (497-546)||(24374794-24374843)
chr4 (479-540)||(44469479-44469540)
chr4 (479-540)||(46168125-46168186)
chr4 (479-546)||(11938697-11938765)
chr4 (497-541)||(24551927-24551971)
chr4 (479-547)||(53147858-53147926)
chr4 (486-546)||(53733730-53733790)
[»] chr8 (21 HSPs)
chr8 (521-619)||(3290743-3290841)
chr8 (479-546)||(38576300-38576368)
chr8 (479-538)||(37732813-37732872)
chr8 (105-205)||(24590541-24590643)
chr8 (489-547)||(11686961-11687019)
chr8 (486-547)||(31602010-31602071)
chr8 (479-543)||(41974626-41974691)
chr8 (479-547)||(37064803-37064871)
chr8 (479-546)||(37024993-37025059)
chr8 (490-540)||(3043240-3043290)
chr8 (497-539)||(8372918-8372960)
chr8 (479-540)||(9197824-9197885)
chr8 (490-547)||(26654375-26654432)
chr8 (479-546)||(8996972-8997040)
chr8 (479-541)||(3165125-3165188)
chr8 (497-543)||(32413763-32413809)
chr8 (497-543)||(39860875-39860921)
chr8 (479-540)||(17725658-17725719)
chr8 (479-547)||(31642084-31642153)
chr8 (479-546)||(27441452-27441520)
chr8 (497-541)||(32414527-32414571)
[»] scaffold0377 (2 HSPs)
scaffold0377 (21-89)||(4446-4514)
scaffold0377 (21-89)||(8485-8553)
[»] chr6 (21 HSPs)
chr6 (21-89)||(22832676-22832744)
chr6 (479-547)||(10171963-10172031)
chr6 (479-547)||(26529510-26529578)
chr6 (114-204)||(7620488-7620578)
chr6 (479-547)||(10171261-10171330)
chr6 (479-547)||(26528808-26528877)
chr6 (173-286)||(12241246-12241358)
chr6 (479-541)||(33435325-33435388)
chr6 (489-547)||(8488465-8488523)
chr6 (479-545)||(19310986-19311053)
chr6 (489-547)||(3623171-3623229)
chr6 (479-541)||(33436277-33436339)
chr6 (479-547)||(12344879-12344948)
chr6 (497-546)||(19323765-19323814)
chr6 (479-547)||(19653955-19654024)
chr6 (500-543)||(19322990-19323033)
chr6 (479-541)||(19311830-19311892)
chr6 (28-78)||(21163025-21163075)
chr6 (479-547)||(21133224-21133293)
chr6 (479-543)||(25060801-25060866)
chr6 (479-546)||(18227717-18227784)
[»] chr7 (48 HSPs)
chr7 (479-546)||(25342483-25342550)
chr7 (479-543)||(30660579-30660643)
chr7 (105-287)||(5642964-5643147)
chr7 (105-287)||(5648816-5648999)
chr7 (479-547)||(37949591-37949659)
chr7 (479-546)||(7668468-7668535)
chr7 (479-547)||(3772524-3772593)
chr7 (497-546)||(24389615-24389664)
chr7 (479-543)||(37950469-37950534)
chr7 (490-546)||(25343300-25343356)
chr7 (479-546)||(27948431-27948499)
chr7 (477-544)||(24719319-24719386)
chr7 (497-547)||(26636107-26636157)
chr7 (497-547)||(30661453-30661503)
chr7 (480-546)||(46428175-46428240)
chr7 (479-546)||(16664124-16664192)
chr7 (479-546)||(17638484-17638552)
chr7 (479-543)||(46428819-46428883)
chr7 (479-541)||(14305075-14305138)
chr7 (479-546)||(18977768-18977835)
chr7 (497-544)||(25599026-25599073)
chr7 (479-545)||(45161954-45162021)
chr7 (497-547)||(19067641-19067691)
chr7 (497-547)||(26636858-26636908)
chr7 (489-547)||(40273556-40273614)
chr7 (479-541)||(43065120-43065182)
chr7 (485-546)||(25343238-25343299)
chr7 (479-539)||(37395505-37395566)
chr7 (479-539)||(45099899-45099960)
chr7 (479-547)||(3029196-3029264)
chr7 (497-541)||(13785597-13785641)
chr7 (105-245)||(15080365-15080508)
chr7 (479-547)||(21496981-21497049)
chr7 (480-544)||(45931218-45931282)
chr7 (480-543)||(14686118-14686181)
chr7 (479-546)||(37706414-37706481)
chr7 (497-547)||(19068393-19068443)
chr7 (497-543)||(25599821-25599867)
chr7 (497-546)||(1417612-1417661)
chr7 (479-544)||(3903340-3903404)
chr7 (496-545)||(21156975-21157024)
chr7 (490-539)||(23889812-23889861)
chr7 (479-539)||(36378797-36378858)
chr7 (497-546)||(38225974-38226023)
chr7 (479-540)||(48718196-48718257)
chr7 (501-541)||(24453730-24453770)
chr7 (488-540)||(31278159-31278211)
chr7 (497-541)||(47719708-47719752)
[»] chr3 (35 HSPs)
chr3 (479-539)||(40872814-40872874)
chr3 (479-547)||(51827492-51827560)
chr3 (479-540)||(54458670-54458732)
chr3 (479-547)||(41458020-41458088)
chr3 (479-546)||(46150728-46150795)
chr3 (479-544)||(264453-264518)
chr3 (497-546)||(45081402-45081451)
chr3 (479-547)||(48648189-48648258)
chr3 (479-539)||(55373712-55373772)
chr3 (497-544)||(265099-265146)
chr3 (479-546)||(31974639-31974705)
chr3 (479-546)||(52281753-52281820)
chr3 (479-540)||(13477043-13477105)
chr3 (498-547)||(981673-981722)
chr3 (479-540)||(10847914-10847975)
chr3 (478-543)||(14871140-14871204)
chr3 (479-540)||(20213536-20213597)
chr3 (498-539)||(52282418-52282459)
chr3 (497-541)||(17603173-17603217)
chr3 (497-541)||(21727533-21727577)
chr3 (498-546)||(29856036-29856084)
chr3 (479-547)||(48765068-48765136)
chr3 (501-547)||(17605715-17605761)
chr3 (501-543)||(29856061-29856103)
chr3 (497-547)||(41474655-41474705)
chr3 (497-547)||(48506443-48506492)
chr3 (497-547)||(48507030-48507080)
chr3 (510-547)||(29856681-29856718)
chr3 (479-540)||(33277509-33277570)
chr3 (497-546)||(37520560-37520609)
chr3 (479-543)||(37988220-37988285)
chr3 (502-547)||(48413329-48413374)
chr3 (479-547)||(48764463-48764532)
chr3 (503-547)||(13477776-13477820)
chr3 (511-547)||(44699880-44699916)
[»] scaffold0085 (3 HSPs)
scaffold0085 (497-547)||(15027-15077)
scaffold0085 (497-547)||(15086-15136)
scaffold0085 (479-539)||(22076-22136)
[»] scaffold0002 (1 HSPs)
scaffold0002 (479-548)||(428898-428967)
[»] scaffold0039 (1 HSPs)
scaffold0039 (111-257)||(32320-32466)
[»] scaffold0176 (1 HSPs)
scaffold0176 (479-546)||(26577-26645)
[»] scaffold0093 (1 HSPs)
scaffold0093 (489-547)||(23726-23784)
[»] scaffold0504 (1 HSPs)
scaffold0504 (479-539)||(5385-5446)
[»] scaffold0086 (1 HSPs)
scaffold0086 (479-547)||(8289-8358)
[»] scaffold2007 (1 HSPs)
scaffold2007 (479-544)||(736-802)
[»] scaffold0096 (1 HSPs)
scaffold0096 (498-539)||(39901-39942)


Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 614
Target Start/End: Original strand, 23856158 - 23856757
Alignment:
Q  18 gttctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggcctatcnnnnnnnnnnn-tccaaagacattggga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||    
T  23856158 gttctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggcctatcaaaaaaaaaaaatccaaagacattggga 23856257  T
Q  117 ttcatccaatttcaagaagcttgaagattgaaggctttgaatggttacatagtgtgtaagatttaggatcgtggtgattcataaattgaaggaacttttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23856258 ttcatccaatttcaagaagcttgaagattgaaggctttgaatggttacatagtgtgtaagatttaggatcgtggtgattcataaattgaaggaacttttt 23856357  T
Q  217 aattagctctcatatacattttcaacattctatagtggaagtttgtagaagagacgttttattctacgaattgaggatgcccccatagctaaaacaatca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23856358 aattagctctcatatacattttcaacattctatagtggaagtttgtagaagagacgttttattctacgaattgaggatgcacccatagctaaaacaatca 23856457  T
Q  317 gggaacctttataaacctggtgttctcttttctcttgctccttaattaccgaaaaattactttaatatatgatgttggattgggttaattgctattgcta 416  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23856458 ggaaacctttataaacctggtgttctcttttctcttgctccttaattaccgaaaaattactttaatatatgatgttggattgggttaattgctattgcta 23856557  T
Q  417 tattctttgtgattgaataattttgaaaacctaattgtcaagaacattgttgttctatcatc--atatatatatagagttaagatccgttgacacctggt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  23856558 tattctttgtgattgaataattttgaaaacctaattgtcaagaacattgttgttctatcatcatatatatatatagagttaagatccgttgacacctggt 23856657  T
Q  515 gtcaacggattgattgacaccaaatctcaaccgcatatcctgtttaatcaagagttcttaattatttgttaaattaactcatgtgaacctttctctctct 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23856658 gtcaacggattgattgacaccaaatctcaaccgcatatcctgtttaatcaagagttcttaattatttgttaaattaactcatgtgaacctttctctctct 23856757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 11750244 - 11750312
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||  ||||||||||||||||||||    
T  11750244 atatatatatagagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 11750312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 20428759 - 20428825
Alignment:
Q  18 gttctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggc 84  Q
    ||||||||| |||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||    
T  20428759 gttctgtggggtgccaacttaattgggatgctacagttacaccttgatgcctaaccttcctattggc 20428825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 23857090 - 23857028
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  23857090 atatatatatatgagttaggatccgttgacacctggtgtcaacggattggttgacaccaaatc 23857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 1297189 - 1297121
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  1297189 atatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 1297121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 42182680 - 42182612
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||||| || ||||||||||| |||||||| |||||  ||||||||||||||||||||    
T  42182680 atatatatatagagttaggacccgttgacaccaggtgtcaagggattcgttgacaccaaatctcaaccg 42182612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 1296366 - 1296433
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||||| | |||||||||||||| |||||||||| |||  |||||||||||||||||||    
T  1296366 atatatatatagagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 1296433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 15774189 - 15774256
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| || || ||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  15774189 atatatatatatagataggatccgttgacacctggtgtcaacgaatttgttgacaccaaatctcaacc 15774256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 24933823 - 24933890
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||| ||||  | ||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  24933823 atatatatagagagacaggatccgttgacacctggtgtcaacgaattcattgacaccaaatctcaacc 24933890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 36237618 - 36237685
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||| ||||| | |||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  36237618 atatatatagagagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatttcaacc 36237685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 18821296 - 18821235
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||    
T  18821296 atatatatatagagtcaggatccattgacaccaggtgtcaacggattaattgacaccaaatc 18821235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 20432434 - 20432373
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  20432434 atatatatatatgagttaagatccgttgacaccaggtatcaacggattcattgacaccaaat 20432373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 27178710 - 27178649
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    |||||||| ||||| || |||||||||||||| ||||||||||||||| |||||||||||||    
T  27178710 atatatatttagagataggatccgttgacaccaggtgtcaacggattgtttgacaccaaatc 27178649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 546
Target Start/End: Original strand, 9275584 - 9275640
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  9275584 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 9275640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 12725681 - 12725613
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||  ||||||||||||| |||||    
T  12725681 atatatatatatgagttaggatccgttgacaccaggtgtcaacggatttgttgacaccaaatcccaacc 12725613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 265
Target Start/End: Original strand, 20592634 - 20592781
Alignment:
Q  120 atccaatttcaagaagcttgaagattgaagg-ctttgaatggttacatagtgtgtaagatttaggatc--gtggtgattcataaattgaaggaa-ctttt 215  Q
    ||||||||||||| ||||||||||||| |||  || || || || ||||||||  |||||||||||||  |||||||||| ||||||||||||| ||||     
T  20592634 atccaatttcaaggagcttgaagattggaggtgttagagtgattgcatagtgtagaagatttaggatcgtgtggtgattcgtaaattgaaggaacctttg 20592733  T
Q  216 taattagctctcatatacattttcaacattctatagtggaagtttgtaga 265  Q
    |||||  ||||  || ||||||| |||||  ||||||||||||| |||||    
T  20592734 taattgactcttgtaaacatttttaacat--tatagtggaagttcgtaga 20592781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 479 - 544
Target Start/End: Original strand, 29512357 - 29512423
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    ||||||||||| |||| | ||||||||||||||||||||||||| |||  |||||||||||||||||    
T  29512357 atatatatatatgagtcatgatccgttgacacctggtgtcaacgaatttgttgacaccaaatctcaa 29512423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 29719451 - 29719500
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  29719451 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 29719500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 22301935 - 22301868
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| || || |||||||||||||| |||||||||| |||  |||||||||||||| ||||    
T  22301935 atatatatatatagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaacc 22301868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 22560615 - 22560565
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||| | ||||||||||||||  ||||||||||||||||||||    
T  22560615 gatccgttgacatcaggtgtcaacggattcgttgacaccaaatctcaaccg 22560565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 29559486 - 29559420
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    ||||||||||| |||||| |||| ||||||||| |||||||||| |||  |||||||||||||||||    
T  29559486 atatatatatatgagttaggatctgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaa 29559420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 9276377 - 9276328
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| |||||||||| |||  |||||||||||||||||||    
T  9276377 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 9276328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 11007228 - 11007285
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||| || ||||||||| ||||||||||||||  ||||||| |||||||||||    
T  11007228 agagttaagctctgttgacaccaggtgtcaacggattcgttgacactaaatctcaacc 11007285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 18174724 - 18174667
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||| |||||||||||| | |||||||||| |||  ||||||||||||||||||||    
T  18174724 gagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccg 18174667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 11751135 - 11751073
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| |||  || ||||||||||    
T  11751135 atatatatatatgagttaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 11751073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 543
Target Start/End: Original strand, 15902125 - 15902171
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||||||| ||||||||||| |  |||||||||||||||||    
T  15902125 gatccgttgacaccaggtgtcaacggttatattgacaccaaatctca 15902171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 18174096 - 18174154
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||| |||||||||||||| ||||| |||| |||  ||||||||||||| ||||||    
T  18174096 agagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccg 18174154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 545
Target Start/End: Original strand, 23343766 - 23343832
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaac 545  Q
    ||||||||||| ||| | |||| ||||||||| | ||||||||||||  |||||| |||||||||||    
T  23343766 atatatatatatagtcaggatctgttgacaccagatgtcaacggattcgttgacatcaaatctcaac 23343832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 9540336 - 9540385
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| |||||||||| |||  |||||||||||||| ||||    
T  9540336 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaacc 9540385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 19918769 - 19918720
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||| ||| ||||||||||||  |||||| ||||||||||||    
T  19918769 gatccgttgacatctgatgtcaacggattcgttgacatcaaatctcaacc 19918720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 24121356 - 24121291
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| |||| | ||||| |||||||| ||||||||| |||| ||||| |||||||||||    
T  24121356 atatatatatatgagtcaggatccattgacaccaggtgtcaacagattcattgagaccaaatctca 24121291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 27177898 - 27177959
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| ||| || |||||||||||||| |||||||||| |||  ||||||||||||    
T  27177898 atatatatatatgagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 27177959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 8542612 - 8542545
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| ||| | ||||| | |||||  ||||||||||||||  ||||||||||||||||||||    
T  8542612 atatatatata-agtcaggatccatggacactaggtgtcaacggattcgttgacaccaaatctcaaccg 8542545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 15902929 - 15902885
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||    
T  15902929 gatccgttgacaccaggtgtcaacggattcgttgacacaaaatct 15902885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 24755059 - 24754995
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| ||| | |||||||||||||| ||||||||  ||||  |||| |||||||||||    
T  24755059 atatatatatatagtcaggatccgttgacaccaggtgtcaattgattcgttgaaaccaaatctca 24754995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 29513194 - 29513150
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||| |||||||| ||||||||||||||  ||||||||||||||    
T  29513194 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 29513150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 36238777 - 36238733
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||| |||||||| ||| |||||||||| |||||||||||||||    
T  36238777 gatccattgacaccaggtatcaacggattcattgacaccaaatct 36238733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 489 - 619
Target Start/End: Complemental strand, 10121608 - 10121477
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccgcatatcctgtttaatcaagagttcttaattatttgt-taaa 587  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |||||||||||||  |||    
T  10121608 agagttaggatccgttgacaccaggtgtcaacggattggttgacaccaaatctcaaccgcatatcttgtttaatcaagggtccttaattatttgtcaaaa 10121509  T
Q  588 ttaactcatgtgaacctttctctctctgctcc 619  Q
    ||||||||||||||||||||||||||||||||    
T  10121508 ttaactcatgtgaacctttctctctctgctcc 10121477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 45818007 - 45818067
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  45818007 atatatatatagagttaagatccgttgacaccaggtgtcaacggattcattgacaccaaat 45818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 16572518 - 16572401
Alignment:
Q  105 aagacattgggattcatccaatttcaagaagcttgaagattgaaggc-tttgaatggttacatagtgtgtaagatttaggatcgtg-gtgattcataaat 202  Q
    ||||| |||||||||||||||||||||   |||| ||||||| |||| ||||| ||| | ||||||||  |||||||||||||||| ||||||| |||||    
T  16572518 aagaccttgggattcatccaatttcaacgggcttaaagattggaggcatttgagtggcttcatagtgtagaagatttaggatcgtgcgtgattcgtaaat 16572419  T
Q  203 tgaaggaactttttaatt 220  Q
    ||||||||| || |||||    
T  16572418 tgaaggaaccttgtaatt 16572401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 25469152 - 25469084
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||  |||||||||||||| |||||    
T  25469152 atatatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccg 25469084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 28181519 - 28181587
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  28181519 atatatatatatagtgaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaaccg 28181587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 30932861 - 30932794
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||  ||| |||||||||||||||    
T  30932861 atatatatatagagtgaggatccgttgacaccaggtgtcaacggattcgttggcaccaaatctcaacc 30932794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 30664024 - 30663974
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  30664024 gatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaaccg 30663974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 4439271 - 4439207
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    ||||||||||| || || |||||||||||||||||||||||||||||  |||||||||||||||||    
T  4439271 atatatatata-agataggatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaa 4439207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 8988603 - 8988546
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||||    
T  8988603 gagttaagatccgctgacaccaggtgtcaacggattccttgacaccaaatctcaaccg 8988546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 25468495 - 25468564
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | ||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  25468495 atatatatatatgagtcaggatccattgacaccaggtgtcaacggattcattgacaccaaatctcaaccg 25468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 49680796 - 49680861
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||  ||||||||||||||||    
T  49680796 atatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 49680861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 7558435 - 7558499
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||||||| || ||||||||||||||  |||||||||||||  ||||||||||||||||    
T  7558435 atatatatatagagataggatccgttgacaccaagtgtcaacggatttgttgacaccaaatctca 7558499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 36389761 - 36389829
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||   |||||||||||||| ||||    
T  36389761 atatatatatatagtcaggatccgttgacacctggtgtcaacggatttgctgacaccaaatctcgaccg 36389829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 13262823 - 13262886
Alignment:
Q  483 atatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||| ||||||| |||||||||||||| |||||||||| |||  |||||||||||||||||||    
T  13262823 atataaagagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 13262886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 168894 - 168944
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| ||||||| |||||| |||||||||||||||||||||    
T  168894 gatccgttgacaccaggtgtcagcggattcattgacaccaaatctcaaccg 168944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 540
Target Start/End: Original strand, 10120780 - 10120830
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  10120780 gagttaggatccgttgacaccaggtgtcaacggattggttgacaccaaatc 10120830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 34309278 - 34309228
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  34309278 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 34309228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 169675 - 169626
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  169675 gatccgttgacaccaggtgtcaacgaatttattgacaccaaatctcaacc 169626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 4433912 - 4433848
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    ||||||||||| || || |||||||||||||| ||||||||||||||  |||||||||||||||||    
T  4433912 atatatatata-agataggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaa 4433848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 9779020 - 9778975
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctc 542  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  9779020 gatccgttgacacctggtgtcaacggatagtttgacaccaaatctc 9778975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 17171917 - 17171977
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    |||||||||||||| || |||||||||||||| |||||||||| |||  ||||||||||||    
T  17171917 atatatatatagagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 17171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 30663344 - 30663412
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||| | ||||| | |||||||||||||| ||| ||||||||||  ||||||||||||||||||||    
T  30663344 atatataaaaagagtcaggatccgttgacaccaggtatcaacggattcgttgacaccaaatctcaaccg 30663412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 547
Target Start/End: Complemental strand, 13263573 - 13263514
Alignment:
Q  488 tagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||| | |||||||||||||| |||||||| |||||  ||||||||||||||||||||    
T  13263573 tagagtcaggatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaaccg 13263514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 46909428 - 46909361
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| ||| | |||||||||||||| | ||||||| |||| |||||||||||||| |||||    
T  46909428 atatatatatatagtcaggatccgttgacaccagatgtcaacagattcattgacaccaaatcacaacc 46909361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 547
Target Start/End: Complemental strand, 46812243 - 46812185
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||| |||||| |||| ||||| ||||||||||||||  ||||||||||||||||||||    
T  46812243 agagataagattcgttaacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 46812185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 11704875 - 11704810
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| |||||| ||||| ||||||||  |||||||||||||  ||||||||||||||||    
T  11704875 atatatatatatgagttaggatccattgacaccaagtgtcaacggattcgttgacaccaaatctca 11704810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 37852509 - 37852570
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| |||  || ||||||||||    
T  37852509 atatatatatatagtcaggatccgttgacacctggtgtcaacgaattcgttaacaccaaatc 37852570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 7406230 - 7406298
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||| | |||||||||||||| ||||| |||| |||  |||||||||||||||||||    
T  7406230 atatatatatatgagtcaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatctcaacc 7406298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 8987775 - 8987843
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||| | |||| ||||||| | ||||||||||||||  |||||||||||||||||||    
T  8987775 atatatatatatgagtcaggatcggttgacatcaggtgtcaacggattcgttgacaccaaatctcaacc 8987843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 25733247 - 25733179
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||||||  || ||| ||||||||||||    
T  25733247 atatatatatatgagttaagatccgttgacatcaggtatcaacggattcgttaacatcaaatctcaacc 25733179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 28182137 - 28182070
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||| |||| | |||| ||||||||| ||||||||||||||  |||||||||||||| |||||    
T  28182137 atatatatat-gagtgaggatctgttgacaccaggtgtcaacggattctttgacaccaaatcttaaccg 28182070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 521
Target Start/End: Original strand, 12760761 - 12760804
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacg 521  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  12760761 atatatatatatgagttaggatccgttgacacctggtgtcaacg 12760804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 26118657 - 26118716
Alignment:
Q  477 tcatatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacacca 536  Q
    ||||||||||||| ||| | |||||||||||||| | ||||||||||||  |||||||||    
T  26118657 tcatatatatatatagtcaggatccgttgacaccagatgtcaacggatttgttgacacca 26118716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 7559247 - 7559201
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||    
T  7559247 gatccgttgacaccaggtgtcaacggatccgttgacaccaaatctca 7559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 17172729 - 17172667
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| ||| || |||||||||||||| ||||||||||||||  ||||| |||||||    
T  17172729 atatatatatatgagataggatccgttgacaccaggtgtcaacggattcgttgacgccaaatc 17172667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 24991955 - 24992017
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| ||| || ||||| |||||||| ||||||||||||||  |||||||||||||    
T  24991955 atatatatatatgagataggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 24992017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 27256760 - 27256710
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| |||||||||| |||  |||||||||||| |||||||    
T  27256760 gatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaaccg 27256710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 32038473 - 32038531
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||| |||| ||||| ||| |||||||||| |||  ||||||||||||||||||||    
T  32038473 agagttaggatcggttgataccaggtgtcaacgaattcgttgacaccaaatctcaaccg 32038531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 34308477 - 34308527
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| |||||||||| |||  |||||||||||| |||||||    
T  34308477 gatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaaccg 34308527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 36390434 - 36390372
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| ||   |||||||||||||    
T  36390434 atatatatatatgagttaggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatc 36390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 13142734 - 13142673
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| |||||| ||||| |||||||| ||||||||||||||  ||||||| ||||    
T  13142734 atatatatatatgagttaggatcccttgacaccaggtgtcaacggattcgttgacactaaat 13142673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 19171764 - 19171825
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    |||||||||||||||   |||||||||||| |  |||||||||||||  |||||||||||||    
T  19171764 atatatatatagagtcgggatccgttgacatcaagtgtcaacggattcgttgacaccaaatc 19171825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 19172639 - 19172580
Alignment:
Q  480 tatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||| |||| | ||||| |||||||| ||||||||||||||  |||||||||||||    
T  19172639 tatatatat-gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 19172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Original strand, 47967866 - 47967910
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||| |||||||| ||||||||||||||  ||||||||||||||    
T  47967866 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 47967910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 479 - 619
Target Start/End: Original strand, 38056779 - 38056921
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccgcatatcctgtttaatcaagagttcttaatt 577  Q
    ||||||||||| ||| || |||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| || |||||||    
T  38056779 atatatatatatgagataggatctgttgacaccaggtgtcaacggattggttgacaccaaatttcaaccgcatatcttgtttaatcaagggtccttaatt 38056878  T
Q  578 atttgt-taaattaactcatgtgaacctttctctctctgctcc 619  Q
    ||||||  |||||||||||||||||||||||||||||||||||    
T  38056879 atttgtcaaaattaactcatgtgaacctttctctctctgctcc 38056921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 26698029 - 26698097
Alignment:
Q  21 ctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggcctatc 89  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26698029 ctgtggggtgccaacctagttgggatgccacagctataccttgatgcctaaccttcctattggcctatc 26698097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 26967761 - 26967829
Alignment:
Q  21 ctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggcctatc 89  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26967761 ctgtggggtgccaacctagttgggatgccacagctataccttgatgcctaaccttcctattggcctatc 26967829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 29087911 - 29087975
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||    
T  29087911 atatatatatagagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatctca 29087975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 4084866 - 4084933
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||||| | ||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  4084866 atatatatatagagtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaacc 4084933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 479 - 545
Target Start/End: Original strand, 29046015 - 29046081
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaac 545  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  29046015 atatatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 29046081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 619
Target Start/End: Complemental strand, 18676881 - 18676819
Alignment:
Q  557 tttaatcaagagttcttaattatttgttaaattaactcatgtgaacctttctctctctgctcc 619  Q
    ||||||||||  | ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  18676881 tttaatcaaggatccttaattattttttaaattaactcatgtgaacctttctctctctactcc 18676819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 235577 - 235646
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||||| ||||| |||||||| ||||||||||||||  ||||||||||||||||||||    
T  235577 atatatatatatgagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 235646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 38057660 - 38057599
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||| ||| |||||||||||||  ||||||||||||||| |||||||||||||    
T  38057660 atatatatatagaattaggatccgttgacactaggtgtcaacggattggttgacaccaaatc 38057599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 234687 - 234747
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||  ||||||||||||    
T  234687 atatatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 17071859 - 17071791
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||||| |||||||||||||| ||||| |||| |||  ||||||||||||| ||||||    
T  17071859 atatatatatagagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccg 17071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 479 - 542
Target Start/End: Complemental strand, 22213044 - 22212981
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctc 542  Q
    ||||||||||| ||||| |||| |||||| || |||||||||||||| ||||||||||||||||    
T  22213044 atatatatatatagttaggatcagttgacgccaggtgtcaacggattcattgacaccaaatctc 22212981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 236995 - 236926
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||||| ||||| |||||||| ||||||||||||||  | ||||||||||||||||||    
T  236995 atatatatatatgagttaggatccattgacaccaggtgtcaacggattcgtagacaccaaatctcaaccg 236926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 6476838 - 6476789
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  6476838 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 6476789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 17071209 - 17071278
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||||| |||||||||||| | |||||||||| |||  ||||||||||||||||||||    
T  17071209 atatatatatatgagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccg 17071278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 19128755 - 19128824
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  |||||||||||||| |||||    
T  19128755 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccg 19128824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 28705945 - 28705876
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||| ||||||||||||    
T  28705945 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacactaaatctcaaccg 28705876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 34600248 - 34600315
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| ||||| |||||||||||| | |||||||||| |||  ||||||||||||||||||||    
T  34600248 atatatatata-agttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccg 34600315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 1554148 - 1554081
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||| |||| || |||||||||||||| |||||||||| |||  |||||||||||||| ||||    
T  1554148 atatatatagagagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaacc 1554081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 7632080 - 7632143
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| ||| || |||||||||||||| ||||||||||||||  ||||||||||||||    
T  7632080 atatatatatatgagataggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 7632143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 237887 - 237826
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||||    
T  237887 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 237826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 546
Target Start/End: Original strand, 10554555 - 10554600
Alignment:
Q  501 cgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||    
T  10554555 cgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 10554600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 19359689 - 19359750
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||||    
T  19359689 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 19359750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 27364534 - 27364485
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| |||||||| |||||  |||||||||||||||||||    
T  27364534 gatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaacc 27364485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 14478907 - 14478967
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| ||| | |||||||||||| | ||||||||||||||  ||||||||||||    
T  14478907 atatatatatatagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaat 14478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 546
Target Start/End: Original strand, 28705170 - 28705218
Alignment:
Q  498 atccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||| ||||||||||||||  || ||||||||||||||||    
T  28705170 atccgttgacaccaggtgtcaacggattcgtttacaccaaatctcaacc 28705218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 33471154 - 33471086
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| ||||| |||| |||||||||  ||||||||| |||  |||||| |||||||||||||    
T  33471154 atatatatatatagttaggatctgttgacaccacgtgtcaacgaattcgttgacaacaaatctcaaccg 33471086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 43510218 - 43510278
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||| ||||||||| |||||||||||||| ||||||||| ||||  || |||||||||    
T  43510218 atatatagatagagttaggatccgttgacaccaggtgtcaacagattcgttaacaccaaat 43510278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 1281821 - 1281884
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| ||| || ||||| |||||||| ||||||||||||||  ||||||||||||||    
T  1281821 atatatatatatgagataggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 1281884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 2313933 - 2313995
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| |  || ||||| |||||||| ||||||||| |||| |||||||||||||||    
T  2313933 atatatatatatatataggatccattgacaccaggtgtcaacagattcattgacaccaaatct 2313995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 10555371 - 10555310
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||||  | |||||||||||||| ||||||||||| |  ||| ||||||||||    
T  10555371 atatatatatagagacaggatccgttgacaccaggtgtcaacggttatattaacaccaaatc 10555310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 541
Target Start/End: Complemental strand, 1283543 - 1283503
Alignment:
Q  501 cgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||||||||| ||||||||||||||  ||||||||||||||    
T  1283543 cgttgacaccaggtgtcaacggattcgttgacaccaaatct 1283503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 26731700 - 26731740
Alignment:
Q  111 ttgggattcatccaatttcaagaagcttgaagattgaaggc 151  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  26731700 ttgggattcatccaatttaaaggagcttgaagattggaggc 26731740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 112 - 476
Target Start/End: Original strand, 21211792 - 21212149
Alignment:
Q  112 tgggattcatccaatttcaagaagcttgaagattgaaggc-tttgaatggttacatagtgtgtaagatttaggatcgtggtgattcataaattgaaggaa 210  Q
    ||||||||||||||||||||| ||||||||||||| |||| || || |||||||| |||||  ||| |||||||| |||||||||| |||||||||||||    
T  21211792 tgggattcatccaatttcaaggagcttgaagattggaggcattggagtggttacacagtgtagaaggtttaggatggtggtgattcgtaaattgaaggaa 21211891  T
Q  211 ctttttaattagctctcatatacattttcaacattctatagtggaagtttgtagaagagacgttttattctacgaattgaggatgcccccatagctaaaa 310  Q
    |   ||||||| ||||  || |||||||||||||||  |||||   ||  ||||| ||| | |||| |||||||||  ||||||   |||  ||| |  |    
T  21211892 c--cttaattaactcttgtaaacattttcaacattc--tagtgttggtccgtagaggaggcattttcttctacgaagagaggattggccctcagcgagga 21211987  T
Q  311 caatcagggaacctttataaacctggtgttctcttttctcttgctccttaattaccgaaaaattactttaatatatgatgt---tggattgggttaattg 407  Q
    | ||  |||||||| |||||| |  ||||||||||||| ||| ||| |||||| | | ||| ||||||| |||||||||||   |||||| |||||        
T  21211988 cgataggggaacctctataaatccagtgttctcttttc-cttactctttaatttctgcaaatttactttgatatatgatgttgatggattaggtta---- 21212082  T
Q  408 ctattgctatattctttgtgattgaataattttgaaaacctaattgtcaagaacattgttgttctatca 476  Q
      ||||  |||| ||||||||||| |||||||| |||||||||| |||||||||| ||||| |||||||    
T  21212083 --attgtcatatgctttgtgattggataatttttaaaacctaatcgtcaagaacactgttgatctatca 21212149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 8938296 - 8938225
Alignment:
Q  18 gttctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggcctatc 89  Q
    ||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  8938296 gttctgtggggtgccaacttagttgggatgctacagttacaccttgatgcctaaccttcctattggcctatc 8938225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 47688545 - 47688477
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  47688545 atatatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 47688477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 30573775 - 30573707
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||| | ||||| |||||||| ||||||||||||||  ||||||||||||||||||||    
T  30573775 atatatatatagagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 30573707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 53772794 - 53772854
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||    
T  53772794 atatatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 53772854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 11939507 - 11939440
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||  ||||||| |||||||||||    
T  11939507 atatatatatatagttaggatccgttgacacctagtgtcaacggattcgttgacacgaaatctcaacc 11939440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 480 - 544
Target Start/End: Complemental strand, 599366 - 599302
Alignment:
Q  480 tatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    |||||||||| |  || |||||||||||||||||||||||||||||  |||||||||||||||||    
T  599366 tatatatatatatataggatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaa 599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 26147099 - 26147031
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| |||  |||||||||||||||||||    
T  26147099 atatatatatatgagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 26147031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 7841781 - 7841844
Alignment:
Q  480 tatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaac 545  Q
    |||||||||||||||| ||||||||||||  ||||||||||| |||  ||||||||||||||||||    
T  7841781 tatatatatagagttaggatccgttgaca--tggtgtcaacgaattcgttgacaccaaatctcaac 7841844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 540
Target Start/End: Original strand, 52871296 - 52871346
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  52871296 gagttaagatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 52871346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 546
Target Start/End: Original strand, 1465309 - 1465374
Alignment:
Q  481 atatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||| | |||||||||||||| ||||||||| |||| ||||||| |||||| |||||    
T  1465309 atatatatagagtcaggatccgttgacaccaggtgtcaacagattcattgacatcaaatcacaacc 1465374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 20774247 - 20774178
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | ||||| |||||||| ||||||||||||||  ||||||||||||||||||||    
T  20774247 atatatatatatgagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 20774178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 142591 - 142523
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| ||| || |||||||||||||| |||||||||| ||| ||||||||||||||| ||||    
T  142591 atatatatatatgagataggatccgttgacaccgggtgtcaacgaattcattgacaccaaatcttaacc 142523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 547
Target Start/End: Complemental strand, 9365862 - 9365814
Alignment:
Q  499 tccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||    
T  9365862 tccgttgacaccaggtgtcaacggattcattgacaccaaatcacaaccg 9365814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 53773653 - 53773590
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| |||||| |||||||||||| | ||||||||||||||  ||||||||||||||    
T  53773653 atatatatatatgagttaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 53773590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 539
Target Start/End: Original strand, 2444369 - 2444419
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||| |||||||||||||| ||||||||||||||  ||||||||||||    
T  2444369 agagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 2444419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 8247701 - 8247751
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||||||||||||||||||  ||||||| |||||| |||||    
T  8247701 gatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccg 8247751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 8265366 - 8265416
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||||||||||||||||||  ||||||| |||||| |||||    
T  8265366 gatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccg 8265416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 547
Target Start/End: Complemental strand, 16903687 - 16903641
Alignment:
Q  501 cgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||||    
T  16903687 cgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 16903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 53732440 - 53732490
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||||||    
T  53732440 gatccgttgacaccaggtgtcaacggattcgttgacactaaatctcaaccg 53732490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 55000674 - 55000736
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||||||||||||| || ||||| |||||||| | ||||||||||||  ||||||||||||||    
T  55000674 atatatatatagagataggatccattgacaccagatgtcaacggattcgttgacaccaaatct 55000736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 8248587 - 8248518
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | |||||||||||||| | ||||||||||||  |||||||||||||| |||||    
T  8248587 atatatatatatgagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaaccg 8248518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 8266252 - 8266183
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | |||||||||||||| | ||||||||||||  |||||||||||||| |||||    
T  8266252 atatatatatatgagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaaccg 8266183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 47785847 - 47785798
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||| ||||||||| ||||||||||||||  |||||||||||||||||||    
T  47785847 gatctgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 47785798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 2446226 - 2446163
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||| |||||| |||||||||||||| ||||||||| ||||  || |||||||||||||    
T  2446226 atatatatat-gagttaggatccgttgacaccaggtgtcaacagattcgttaacaccaaatctca 2446163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 30914781 - 30914925
Alignment:
Q  105 aagacattgggattcatccaatttcaagaagcttgaagattgaaggctttgaa-tggttacatagtgtgtaagatttaggatcgtggtgattcataaatt 203  Q
    ||||| || |||||||||| |||||||| |||||||| |||| |||| ||||| |||||||||| |||  | ||||||  |  |||||||||  ||||||    
T  30914781 aagacctttggattcatccgatttcaaggagcttgaatattggaggcattgaagtggttacataatgtagacgatttaaaaatgtggtgatttgtaaatt 30914880  T
Q  204 gaaggaactttttaattagctctcatatacattttcaacattcta 248  Q
    |||  ||| || |||| | ||||| || ||| |||||||||||||    
T  30914881 gaataaaccttgtaataaactctcgtaaacaatttcaacattcta 30914925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 42882738 - 42882686
Alignment:
Q  488 tagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    |||||||| |||||||||||||| | ||||||||||||  |||||||||||||    
T  42882738 tagagttaggatccgttgacaccagatgtcaacggattcgttgacaccaaatc 42882686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 565
Target Start/End: Original strand, 7841530 - 7841617
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccgcatatcctgtttaatcaa 565  Q
    ||||||||||| |||| | |||||||||||| | ||||| ||||||||  |||||||||||||||| ||| ||||  | |||||||||    
T  7841530 atatatatatatgagtcaggatccgttgacatcaggtgttaacggattcgttgacaccaaatctcatccgtatattttatttaatcaa 7841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 546
Target Start/End: Original strand, 9365164 - 9365223
Alignment:
Q  487 atagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||| | |||||||| ||||| |||||||||| |||  |||||||||||||||||||    
T  9365164 atagagtcaggatccgttaacaccaggtgtcaacgaatttgttgacaccaaatctcaacc 9365223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 547
Target Start/End: Original strand, 47687898 - 47687964
Alignment:
Q  480 tatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||| |||||| |||||||||||||| ||||| |||| |||  ||||||||||||| ||||||    
T  47687898 tatatatat-gagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccg 47687964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 547
Target Start/End: Complemental strand, 55001489 - 55001438
Alignment:
Q  496 agatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||| ||||||||||||||  ||||||| |||||| |||||    
T  55001489 agatccgttgacaccaggtgtcaacggattcgttgacactaaatcttaaccg 55001438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 541
Target Start/End: Original strand, 55976172 - 55976215
Alignment:
Q  498 atccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||    
T  55976172 atccgttgacaccaggtgtcaacggattcgttgacaccaaatct 55976215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 2182569 - 2182523
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||||||| ||||||||||| |  |||||||||||||||||    
T  2182569 gatccgttgacaccaggtgtcaacggttatattgacaccaaatctca 2182523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 19551096 - 19551050
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||||||| ||||||||||| |  |||||||||||||||||    
T  19551096 gatccgttgacaccaggtgtcaacggttatattgacaccaaatctca 19551050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 31329784 - 31329722
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  || ||||||||||    
T  31329784 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatc 31329722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 543
Target Start/End: Complemental strand, 43146692 - 43146650
Alignment:
Q  501 cgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||| ||||||||||||||  ||||||||||||||||    
T  43146692 cgttgacaccaggtgtcaacggattccttgacaccaaatctca 43146650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 56262483 - 56262533
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| |||||||| | |||  ||||||||||||||||||||    
T  56262483 gatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccg 56262533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 19080390 - 19080439
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||| ||||||||| ||||||||||||||  |||||||||||| ||||||    
T  19080390 gatctgttgacaccaggtgtcaacggattcgttgacaccaaatttcaacc 19080439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 24374794 - 24374843
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| | |||||||| |||  |||||||||||||||||||    
T  24374794 gatccgttgacaccagctgtcaacgaattcgttgacaccaaatctcaacc 24374843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 44469479 - 44469540
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| ||| | |||||| ||||||| |||||||||| |||  |||||||||||||    
T  44469479 atatatatatatagtcatgatccgatgacaccaggtgtcaacgaattcgttgacaccaaatc 44469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 46168125 - 46168186
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| ||||| |||||||||||| | |||||||||||| |  ||||||| |||||    
T  46168125 atatatatatatagttaggatccgttgacatcaggtgtcaacggaattgttgacactaaatc 46168186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 11938697 - 11938765
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| | |||| |||| ||| ||||| |||||||||| |||  |||||||||||||||||||    
T  11938697 atatatatatatgtgttaggatctgttcacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 11938765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 24551971 - 24551927
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||| |||||||| ||||||||||||||  ||||||||||||||    
T  24551971 gatccattgacaccaggtgtcaacggatttgttgacaccaaatct 24551927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 53147858 - 53147926
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| | | | ||||| |||||||| | ||||||||||||  ||||||||||||| ||||||    
T  53147858 atatatatatataatcaggatccattgacaccagatgtcaacggattcgttgacaccaaatcccaaccg 53147926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 546
Target Start/End: Complemental strand, 53733790 - 53733730
Alignment:
Q  486 tatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||  |||  |||||||| ||||||||||||||  |||||||||||| ||||||    
T  53733790 tatagagttataatctattgacaccaggtgtcaacggattcgttgacaccaaatttcaacc 53733730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 521 - 619
Target Start/End: Complemental strand, 3290841 - 3290743
Alignment:
Q  521 ggattgattgacaccaaatctcaaccgcatatcctgtttaatcaagagttcttaattatttgttaaattaactcatgtgaacctttctctctctgctcc 619  Q
    |||||||||||||| |||||||||| ||||||  |||||||||||| || ||||||||||| |||||||||||||| ||||||||||| ||||||||||    
T  3290841 ggattgattgacactaaatctcaactgcatatgttgtttaatcaagggtccttaattatttcttaaattaactcatatgaacctttctatctctgctcc 3290743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 38576368 - 38576300
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  38576368 atatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 38576300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 37732813 - 37732872
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaa 538  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  37732813 atatatatatagagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaa 37732872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 24590541 - 24590643
Alignment:
Q  105 aagacattgggattcatccaatttcaagaagcttgaagattgaaggc--tttgaatggttacatagtgtgtaagatttaggatcgtggtgattcataaat 202  Q
    ||||| |||| ||||||||||||||| | ||||||||||||| |||   || || || || |||||||| |||||||||||| |||||| ||||||||||    
T  24590541 aagaccttggaattcatccaatttcatggagcttgaagattgcaggtaattggagtgattgcatagtgtataagatttaggaacgtggttattcataaat 24590640  T
Q  203 tga 205  Q
    |||    
T  24590641 tga 24590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 547
Target Start/End: Complemental strand, 11687019 - 11686961
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||| ||||||||||||||||||||||||| |||  ||||||| ||||||||||||    
T  11687019 agagttaggatccgttgacacctggtgtcaacgaattcgttgacactaaatctcaaccg 11686961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 486 - 547
Target Start/End: Original strand, 31602010 - 31602071
Alignment:
Q  486 tatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||| |||| ||||||||| |||||||||| |||  ||||||||||||||||||||    
T  31602010 tatagagttaggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccg 31602071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 41974626 - 41974691
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||||||||    
T  41974626 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 41974691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 37064803 - 37064871
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| ||| | |||| ||||||||| |||||||||| ||| |||||||||||||| ||||||    
T  37064803 atatatatatatagtcaggatctgttgacaccaggtgtcaacgaattcattgacaccaaatcacaaccg 37064871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 37024993 - 37025059
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| ||||| ||||||||||||||  |||||||| ||||  |||||||||||||||||||    
T  37024993 atatatatatatagttaggatccgttgacacc-agtgtcaacagattcgttgacaccaaatctcaacc 37025059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 540
Target Start/End: Original strand, 3043240 - 3043290
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    |||||| ||||||||||||||||||||||||  ||| ||||||||||||||    
T  3043240 gagttaggatccgttgacacctggtgtcaacaaattcattgacaccaaatc 3043290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 539
Target Start/End: Original strand, 8372918 - 8372960
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  8372918 gatccgttgacacctggtgtcaacggattcgttgacaccaaat 8372960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 9197885 - 9197824
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||||| | ||||||||||||||  ||||||||| |||  |||||||||||||    
T  9197885 atatatatatagagtcaggatccgttgacaccaagtgtcaacgaattcgttgacaccaaatc 9197824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 26654432 - 26654375
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||| |||||||||||||||| |||||||| |||||  |||||||||||||| |||||    
T  26654432 gagtcaagatccgttgacaccaggtgtcaatggattcgttgacaccaaatcttaaccg 26654375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 8997040 - 8996972
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||| | |||||||||| ||| ||||||||| ||||  |||||||||||||||||||    
T  8997040 atatatatatatgagtcaggatccgttgataccaggtgtcaactgatttgttgacaccaaatctcaacc 8996972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 3165188 - 3165125
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| |||| | |||||||||||| | ||||||||||||||  ||||||||||||||    
T  3165188 atatatatatatgagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 3165125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 543
Target Start/End: Original strand, 32413763 - 32413809
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||||||| ||||||||||| |  |||||||||||||||||    
T  32413763 gatccgttgacaccaggtgtcaacggttatattgacaccaaatctca 32413809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 39860921 - 39860875
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||||||| ||||||||||| |  |||||||||||||||||    
T  39860921 gatccgttgacaccaggtgtcaacggttatattgacaccaaatctca 39860875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 17725719 - 17725658
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||||  | |||||||||||| | |||||||||| |||  |||||||||||||    
T  17725719 atatatatatagagacaggatccgttgacagcaggtgtcaacgaattcgttgacaccaaatc 17725658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 31642153 - 31642084
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | ||||| |||||||| | |||||||| |||  ||||||||||||||||||||    
T  31642153 atatatatatatgagtcaggatccattgacaccagatgtcaacgaattcgttgacaccaaatctcaaccg 31642084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 27441452 - 27441520
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| ||| || |||||||||||||| |||||||||| |||  |||||| ||||||| ||||    
T  27441452 atatatatatatgagataggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaacc 27441520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 32414571 - 32414527
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||| ||||||||| ||||||||||||||  ||||||||||||||    
T  32414571 gatctgttgacaccaggtgtcaacggattcgttgacaccaaatct 32414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 4514 - 4446
Alignment:
Q  21 ctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggcctatc 89  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  4514 ctgtggggtgccaacctagttgggatgccacagctataccttgatgcctaaccttcctattggcctatc 4446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 8553 - 8485
Alignment:
Q  21 ctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggcctatc 89  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  8553 ctgtggggtgccaacctagttgggatgccacagctataccttgatgcctaaccttcctattggcctatc 8485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 22832744 - 22832676
Alignment:
Q  21 ctgtggagtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcctattggcctatc 89  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  22832744 ctgtggggtgccaacctagttgggatgccacagctataccttgatgcctaaccttcctattggcctatc 22832676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 10172031 - 10171963
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||||| |||||||||||||| |||||||||| |||  ||||||||||||||||||||    
T  10172031 atatatatatagagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaaccg 10171963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 26529578 - 26529510
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  26529578 atatatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 26529510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 7620488 - 7620578
Alignment:
Q  114 ggattcatccaatttcaagaagcttgaagattgaaggc-tttgaatggttacatagtgtgtaagatttaggatcgtggtgattcataaattg 204  Q
    ||||||||||||||||||| ||||||||||||| |||| |  || ||||||||||||||  ||||||||||||||| ||||||| |||||||    
T  7620488 ggattcatccaatttcaaggagcttgaagattggaggcatcggagtggttacatagtgtaaaagatttaggatcgt-gtgattcgtaaattg 7620578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 10171261 - 10171330
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  10171261 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 10171330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 26528808 - 26528877
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| |||  ||||||||||||||||||||    
T  26528808 atatatatatatgagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaaccg 26528877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 12241358 - 12241246
Alignment:
Q  173 taagatttaggatcgtggtgattcataaattgaaggaactttt-taattagctctcatatacattttcaacattctatagtggaagtttgtagaagagac 271  Q
    ||||||||||||  | | ||||||||||||| ||||||| ||| ||||| |||||  || ||||||||||||||  ||||||||||  ||||||||| |     
T  12241358 taagatttaggacagggttgattcataaatttaaggaacctttgtaattggctcttgtaaacattttcaacatt--atagtggaagcgtgtagaagataa 12241261  T
Q  272 gttttattctacgaa 286  Q
    |||||||||||||||    
T  12241260 gttttattctacgaa 12241246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 33435325 - 33435388
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||  ||||||||||||||    
T  33435325 atatatatatatgagttaggatccgttgacacctggtgttaacggattcgttgacaccaaatct 33435388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 8488465 - 8488523
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||| ||||| |||||||| ||||||||||||||  ||||||||||||||||||||    
T  8488465 agagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 8488523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 545
Target Start/End: Original strand, 19310986 - 19311053
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaac 545  Q
    ||||||||||| |||| | |||||||||||||| ||||| ||||||||  ||||||||||||||||||    
T  19310986 atatatatatatgagtcaggatccgttgacaccaggtgttaacggatttgttgacaccaaatctcaac 19311053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 3623171 - 3623229
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||| |||||||||||| | |||||||||| |||  ||||||||||||||||||||    
T  3623171 agagttaggatccgttgacatcaggtgtcaacgaattctttgacaccaaatctcaaccg 3623229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 33436339 - 33436277
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| ||| | |||||||||||||| | ||||||||||||  ||||||||||||||    
T  33436339 atatatatatatagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatct 33436277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 12344879 - 12344948
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||||| ||||| |||||||| ||||||||| ||||  |||| |||||||||||||||    
T  12344879 atatatatatatgagttaggatccattgacaccaggtgtcaacagattcgttgataccaaatctcaaccg 12344948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 19323814 - 19323765
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| |||||||||| |||  |||||||||||||||||||    
T  19323814 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 19323765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 19653955 - 19654024
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| |||||| |||||||||||||||||| ||| |  |||||||||||||| |||||    
T  19653955 atatatatatatgagtcaagatctgttgacacctggtgtcaatggactcgttgacaccaaatcttaaccg 19654024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 543
Target Start/End: Original strand, 19322990 - 19323033
Alignment:
Q  500 ccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||    
T  19322990 ccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 19323033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 19311892 - 19311830
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||| |||||| ||| | ||| |||||||||| ||||||||||||||  ||||||||||||||    
T  19311892 atatgtatatatagtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaatct 19311830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 21163075 - 21163025
Alignment:
Q  28 gtgccaacctagttgggatgccacaggtacaccttgatgcctaaccttcct 78  Q
    |||||||||||||||| ||||  ||| | ||||||||||||||||||||||    
T  21163075 gtgccaacctagttggtatgcttcagtttcaccttgatgcctaaccttcct 21163025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 21133293 - 21133224
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||||| ||||||||||||||  |||| |||| |||  |||||||||||||| |||||    
T  21133293 atatatatatatgagttaggatccgttgacaccatgtgttaacgaattcgttgacaccaaatcttaaccg 21133224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 25060801 - 25060866
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| |||||| |||||||||||||| ||||||||| ||||  || |||| ||||||||    
T  25060801 atatatatatatgagttaggatccgttgacaccaggtgtcaacagattcgttaacacaaaatctca 25060866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 18227717 - 18227784
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||| | |||||||||||||| | ||||||||||||  ||||||||||||| |||||    
T  18227717 atatatatatatgagtcaggatccgttgacaccag-tgtcaacggattcgttgacaccaaatcacaacc 18227784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 48)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 25342483 - 25342550
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  25342483 atatatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 25342550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 30660579 - 30660643
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||    
T  30660579 atatatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 30660643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 105 - 287
Target Start/End: Complemental strand, 5643147 - 5642964
Alignment:
Q  105 aagacattgggattcatccaatttcaagaagcttgaagattgaaggc--tttgaatggttacatagtgtgtaagatttaggatcgtggtgattcataaat 202  Q
    ||||| |||||||||||||||||||||| ||||||||| ||| ||||  || || || ||||| |||||  ||||||||| ||||||||||||| |||||    
T  5643147 aagaccttgggattcatccaatttcaaggagcttgaagtttggaggcaattggagtgattacacagtgtagaagatttagaatcgtggtgattcgtaaat 5643048  T
Q  203 tgaaggaa-ctttttaattagctctcatatacattttcaacattctatagtggaagtttgtagaagagacgttttattctacgaat 287  Q
    |||| ||| |||  |||||   | |  || |||||||||||||  |||||||||||   ||||||||| | |||||||||||||||    
T  5643047 tgaaagaaccttggtaattgattatagtaaacattttcaacat--tatagtggaagcccgtagaagaggcattttattctacgaat 5642964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 105 - 287
Target Start/End: Complemental strand, 5648999 - 5648816
Alignment:
Q  105 aagacattgggattcatccaatttcaagaagcttgaagattgaaggc--tttgaatggttacatagtgtgtaagatttaggatcgtggtgattcataaat 202  Q
    ||||| |||||||||||||||||||||| ||||||||| ||| ||||  || || || ||||| |||||  ||||||||| ||||||||||||| |||||    
T  5648999 aagaccttgggattcatccaatttcaaggagcttgaagtttggaggcaattggagtgattacacagtgtagaagatttagaatcgtggtgattcgtaaat 5648900  T
Q  203 tgaaggaa-ctttttaattagctctcatatacattttcaacattctatagtggaagtttgtagaagagacgttttattctacgaat 287  Q
    |||| ||| |||  |||||   | |  || |||||||||||||  |||||||||||   ||||||||| | |||||||||||||||    
T  5648899 tgaaagaaccttggtaattgattatagtaaacattttcaacat--tatagtggaagcccgtagaagaggcattttattctacgaat 5648816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 37949591 - 37949659
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||  | |||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  37949591 atatatatatagagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 37949659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 7668468 - 7668535
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| ||| | |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  7668468 atatatatatatagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 7668535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 3772593 - 3772524
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| |||  ||||||||||||||||||||    
T  3772593 atatatatatatgagttaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatctcaaccg 3772524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 24389664 - 24389615
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  24389664 gatccgttgacaccaggtgtcaacggattcattgacaccaaatctcaacc 24389615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 37950534 - 37950469
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||  ||||||||||||||||    
T  37950534 atatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 37950469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 546
Target Start/End: Original strand, 25343300 - 25343356
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  25343300 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 25343356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 27948431 - 27948499
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| |||  |||||||||||||||||||    
T  27948431 atatatatatatgagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 27948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 544
Target Start/End: Original strand, 24719319 - 24719386
Alignment:
Q  477 tcatatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    ||||||||||||| ||||| |||||||||||||| | ||||||||||||  |||||||||||| ||||    
T  24719319 tcatatatatatatagttaggatccgttgacaccagatgtcaacggattcgttgacaccaaatatcaa 24719386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 26636107 - 26636157
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  26636107 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 26636157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 30661503 - 30661453
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  30661503 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccg 30661453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 46428175 - 46428240
Alignment:
Q  480 tatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||| |||| | |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  46428175 tatatatat-gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 46428240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 16664192 - 16664124
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||||   ||||||| |||||||||||    
T  16664192 atatatatatatgagttaggatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaacc 16664124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 17638552 - 17638484
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||||   ||||||| |||||||||||    
T  17638552 atatatatatatgagttaggatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaacc 17638484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 46428883 - 46428819
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||||||| | |||||||||||||| |||||||||| |||  |||||| |||||||||    
T  46428883 atatatatatagagtcaggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatctca 46428819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 14305075 - 14305138
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| ||| || |||||||||||||  |||||||||||||| |||||||||||||||    
T  14305075 atatatatatatgagataggatccgttgacactaggtgtcaacggattcattgacaccaaatct 14305138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 18977835 - 18977768
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| ||| | ||||| |||||||| ||||||||||||||  || ||||||||||||||||    
T  18977835 atatatatatatagtcaggatccattgacaccaggtgtcaacggattcgttaacaccaaatctcaacc 18977768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 25599026 - 25599073
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||    
T  25599026 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaa 25599073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 545
Target Start/End: Original strand, 45161954 - 45162021
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaac 545  Q
    ||||||||||| |||||| ||||| |||||||| ||||| ||||||||  ||||||||||||||||||    
T  45161954 atatatatatatgagttaggatccattgacaccaggtgttaacggattcgttgacaccaaatctcaac 45162021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 19067641 - 19067691
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||  |||||||||||||  ||||||||||||||||||||    
T  19067641 gatccgttgacaccacgtgtcaacggattcgttgacaccaaatctcaaccg 19067691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 26636908 - 26636858
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||  ||||||||||||||  ||||||||||||||||||||    
T  26636908 gatccgttgacacaaggtgtcaacggattcgttgacaccaaatctcaaccg 26636858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 40273556 - 40273614
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||| |||||||||||||| |||||||| | |||  ||||||||||||||||||||    
T  40273556 agagttaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccg 40273614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 43065182 - 43065120
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||||||||| |   |||||||||||||||| ||||||||||||||  ||||||||||||||    
T  43065182 atatatatatatataaaagatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 43065120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 485 - 546
Target Start/End: Complemental strand, 25343299 - 25343238
Alignment:
Q  485 atatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||| | |||||||||||||| |||||||| | |||  |||||||||||||||||||    
T  25343299 atatagagtcaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaacc 25343238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 37395566 - 37395505
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||  || |||||||||    
T  37395566 atatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttaacaccaaat 37395505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 45099960 - 45099899
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||||    
T  45099960 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 45099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 3029264 - 3029196
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |  || |||||||||||||| |||||||||| |||  ||||||||||||| ||||||    
T  3029264 atatatatatatatataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcccaaccg 3029196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 13785641 - 13785597
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||    
T  13785641 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 13785597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 15080508 - 15080365
Alignment:
Q  105 aagacattgggattcatccaatttcaagaagcttgaagattgaaggc--tttgaatggttacatagtgtgtaagatttaggatcgtggtgattcataaat 202  Q
    ||||| ||| |||||||||||||||||| ||||| ||||||| ||||  ||||| || || |||| |||  || |||||||||  ||||||||||||||     
T  15080508 aagaccttgagattcatccaatttcaaggagctttaagattggaggcattttgagtgattgcataatgtagaaaatttaggataatggtgattcataaaa 15080409  T
Q  203 tgaaggaa-ctttttaattagctctcatatacattttcaacatt 245  Q
    | ||| || |||| |||||  ||| | || ||||||||||||||    
T  15080408 ttaagaaacctttataattgactcgcgtaaacattttcaacatt 15080365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 21497049 - 21496981
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| | | | |||||||||||| | |||||||||| |||  ||||||||||||||||||||    
T  21497049 atatatatatataatcaggatccgttgacaacaggtgtcaacgaattcgttgacaccaaatctcaaccg 21496981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 544
Target Start/End: Complemental strand, 45931282 - 45931218
Alignment:
Q  480 tatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    |||||||||||||||| |||||||| |||||   |||||||||||   |||||||||||||||||    
T  45931282 tatatatatagagttaggatccgttaacaccatatgtcaacggatccgttgacaccaaatctcaa 45931218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 14686118 - 14686181
Alignment:
Q  480 tatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||| || |||| || ||||||||||||||  |||||||||||||  ||||||||||||||||    
T  14686118 tatatttaaagagataggatccgttgacaccaagtgtcaacggatttgttgacaccaaatctca 14686181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 37706414 - 37706481
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||||| | ||||| |||||||| ||| ||||||||||  || ||||||||| ||||||    
T  37706414 atatatatatagagtcaggatccattgacaccaggtatcaacggattcgttaacaccaaatttcaacc 37706481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 19068443 - 19068393
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| |||||||||| |||  |||||||||||| |||||||    
T  19068443 gatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaaccg 19068393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 25599867 - 25599821
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||||||| ||||||||  |||| |||||||||||||||||    
T  25599867 gatccgttgacaccaggtgtcaatagattcattgacaccaaatctca 25599821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 1417612 - 1417661
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| |||||||||| |||  |||||||||||||| ||||    
T  1417612 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaacc 1417661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 3903404 - 3903340
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||||   |||||||||||| ||||    
T  3903404 atatatatata-agtcaggatccgttgacaccaggtgtcaacggatccgttgacaccaaatatcaa 3903340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 545
Target Start/End: Complemental strand, 21157024 - 21156975
Alignment:
Q  496 agatccgttgacacctggtgtcaacggattgattgacaccaaatctcaac 545  Q
    ||||||||||||||| | ||||||| |||| ||||||||||||| |||||    
T  21157024 agatccgttgacaccagatgtcaacagattcattgacaccaaatttcaac 21156975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 539
Target Start/End: Complemental strand, 23889861 - 23889812
Alignment:
Q  490 gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    |||| ||||||||||| ||||||||||||||| |||  ||||||||||||    
T  23889861 gagtcaagatccgttggcacctggtgtcaacgaattcgttgacaccaaat 23889812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 36378797 - 36378858
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| |||| | |||| |||||||||||||||| |||||||  ||||||||||||    
T  36378797 atatatatatatgagtcaggatctgttgacacctggtgtcgacggattcgttgacaccaaat 36378858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 38226023 - 38225974
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||||||| |||||||||| |||  |||||||||||||| ||||    
T  38226023 gatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaacc 38225974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 48718257 - 48718196
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||||||| ||||| |||||| | |||||||| ||||   |||||||||||||    
T  48718257 atatatatatagagttaggatccattgacagcaggtgtcaatggatccgttgacaccaaatc 48718196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 541
Target Start/End: Complemental strand, 24453770 - 24453730
Alignment:
Q  501 cgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||||||||| ||||||||||||||  ||||||||||||||    
T  24453770 cgttgacaccaggtgtcaacggatttgttgacaccaaatct 24453730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 31278211 - 31278159
Alignment:
Q  488 tagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||| || |||||||||||||| | ||||||||||||  |||||||||||||    
T  31278211 tagagataggatccgttgacaccagatgtcaacggattcgttgacaccaaatc 31278159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 47719752 - 47719708
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    ||||| |||||||| ||||||||||||||  ||||||||||||||    
T  47719752 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 47719708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 40872874 - 40872814
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||    
T  40872874 atatatatatatagttaagatccgttgacaccaggtgtcaacggattcattgacaccaaat 40872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 51827560 - 51827492
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  51827560 atatatatatatagtcaagatccgttgacacctggtgtcaacggattcgttgtcaccaaatcttaaccg 51827492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 54458732 - 54458670
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||    
T  54458732 atatatatatatgaattaggatccgttgacacctggtgtcaacggattggttgacaccaaatc 54458670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 41458020 - 41458088
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||| | ||| |||||| ||| ||||||||||||||  ||||||||||||||||||||    
T  41458020 atatatatatagagtcaggattcgttgataccaggtgtcaacggattcgttgacaccaaatctcaaccg 41458088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 46150795 - 46150728
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||| ||||||||| | |||||||||||||  ||||||||||||||  |||||||||||||||||||    
T  46150795 atataaatatagagtcaggatccgttgacactaggtgtcaacggattcgttgacaccaaatctcaacc 46150728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 544
Target Start/End: Original strand, 264453 - 264518
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    ||||||||||| ||||| ||||| |||||||| |||||||| |||||  |||||||||||||||||    
T  264453 atatatatatatagttaggatccattgacaccaggtgtcaatggatttgttgacaccaaatctcaa 264518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 45081451 - 45081402
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  45081451 gatccgttgacacctagtgtcaacggattcgttgacaccaaatctcaacc 45081402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 48648189 - 48648258
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  |||||||||||||| |||||    
T  48648189 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccg 48648258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 55373772 - 55373712
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||||||| | ||| |||||||||| ||||||||||||||  ||||||||||||    
T  55373772 atatatatatagagtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaat 55373712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 265146 - 265099
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||    
T  265146 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaa 265099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 31974639 - 31974705
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| || || ||||||||||||||  |||||||||||||  |||||||||||||||||||    
T  31974639 atatatatata-agataggatccgttgacaccaagtgtcaacggattcgttgacaccaaatctcaacc 31974705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 52281753 - 52281820
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||| ||||| |  ||||||||| ||||||||||||||||||  ||||||||| |||||||||    
T  52281753 atatatatagagagtcagaatccgttgatacctggtgtcaacggattcgttgacaccagatctcaacc 52281820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 13477043 - 13477105
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| |||| | |||||||||||||| |||||||||| ||| ||||||||||||||    
T  13477043 atatatatatatgagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatc 13477105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 981673 - 981722
Alignment:
Q  498 atccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||| |||||||||| |||  ||||||||||||||||||||    
T  981673 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccg 981722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 10847975 - 10847914
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||| | | |||||||||| ||||| ||||||||| |||| ||||||||||||||    
T  10847975 atatatatatataatcaagatccgttaacaccaggtgtcaacagattcattgacaccaaatc 10847914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 478 - 543
Target Start/End: Original strand, 14871140 - 14871204
Alignment:
Q  478 catatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||||| ||||| | |||||||||||||| |||||||||| |||  ||||||||||||||||    
T  14871140 catatatata-agagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctca 14871204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 20213597 - 20213536
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||||| | |||||||||||||| |||||| ||| |||  |||||||||||||    
T  20213597 atatatatatagagtcaggatccgttgacaccaggtgtcgacgaattcgttgacaccaaatc 20213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 539
Target Start/End: Complemental strand, 52282459 - 52282418
Alignment:
Q  498 atccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  52282459 atccgttgacaccaggtgtcaacggattcattgacaccaaat 52282418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 541
Target Start/End: Original strand, 17603173 - 17603217
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||    
T  17603173 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 17603217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 21727577 - 21727533
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 541  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||    
T  21727577 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 21727533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 546
Target Start/End: Complemental strand, 29856084 - 29856036
Alignment:
Q  498 atccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||||| | |||||||| ||| ||||||||||||||||||||    
T  29856084 atccgttgacaccagctgtcaacgtattcattgacaccaaatctcaacc 29856036  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 48765136 - 48765068
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| ||| | ||||| |||||||| |||||||| |||||  |||||||||||||| |||||    
T  48765136 atatatatatatagtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccg 48765068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 17605715 - 17605761
Alignment:
Q  501 cgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||| ||||||||||||||  |||||||||||| |||||||    
T  17605715 cgttgacaccaggtgtcaacggattcgttgacaccaaatttcaaccg 17605761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 29856061 - 29856103
Alignment:
Q  501 cgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    |||||||| ||||||||||||||||  ||||||||||||||||    
T  29856061 cgttgacagctggtgtcaacggattcgttgacaccaaatctca 29856103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 41474655 - 41474705
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||| ||||||||||||||||  || |||| ||||||||||||    
T  41474655 gatccgttgacatctggtgtcaacggattcgtttacacaaaatctcaaccg 41474705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 48506443 - 48506492
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||| ||||||||||| |||  ||||||||||||||||||||    
T  48506443 gatccgttgacac-tggtgtcaacgaattcgttgacaccaaatctcaaccg 48506492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 48507080 - 48507030
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||| |||||||| | |||  ||||||||||||||||||||    
T  48507080 gatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccg 48507030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 547
Target Start/End: Complemental strand, 29856718 - 29856681
Alignment:
Q  510 ctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  29856718 ctggtgtcaacggattcgttgacaccaaatctcaaccg 29856681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 33277570 - 33277509
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatc 540  Q
    ||||||||||||||| |  ||||||||||||| |||||||||| |||  || ||||||||||    
T  33277570 atatatatatagagtcagaatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 33277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 37520609 - 37520560
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    |||||||||| ||| |||||||||| |||  |||||||||||||||||||    
T  37520609 gatccgttgataccaggtgtcaacgaattcgttgacaccaaatctcaacc 37520560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 37988285 - 37988220
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctca 543  Q
    ||||||||||| |||| | ||||| |||||||| |||||||||| |||  ||||||||||||||||    
T  37988285 atatatatatatgagtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatctca 37988220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 547
Target Start/End: Original strand, 48413329 - 48413374
Alignment:
Q  502 gttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||| ||||||||||||||  ||||||||||||| ||||||    
T  48413329 gttgacaccaggtgtcaacggattcgttgacaccaaatcacaaccg 48413374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 48764463 - 48764532
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||| | ||||| |||||| | |||||||||| |||  ||||||||||||||||||||    
T  48764463 atatatatatatgagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccg 48764532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 547
Target Start/End: Complemental strand, 13477820 - 13477776
Alignment:
Q  503 ttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||| |||||||||| |||  ||||||||||||||||||||    
T  13477820 ttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccg 13477776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 547
Target Start/End: Original strand, 44699880 - 44699916
Alignment:
Q  511 tggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    |||||||||||||||  ||||||||||||||||||||    
T  44699880 tggtgtcaacggattcgttgacaccaaatctcaaccg 44699916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 15027 - 15077
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  15027 gatccgttgacacctagtgtcaacggattcattgacaccaaatctcaaccg 15077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 15086 - 15136
Alignment:
Q  497 gatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  15086 gatccgttgacacctagtgtcaacggattcattgacaccaaatctcaaccg 15136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 22136 - 22076
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||||||  | |||||||||||||| ||||||||||||||  ||||||||||||    
T  22136 atatatatatagagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 22076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 548
Target Start/End: Complemental strand, 428967 - 428898
Alignment:
Q  479 atatatatatagagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccgc 548  Q
    ||||||||||||||| | |||||||||||||| ||| |||||| |||  |||||||||||||||||||||    
T  428967 atatatatatagagtcaggatccgttgacacccggtatcaacgaattcgttgacaccaaatctcaaccgc 428898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 32320 - 32466
Alignment:
Q  111 ttgggattcatccaatttcaagaagcttgaagattgaaggctttgaa-tggttacatagtgtgtaagatttaggatcgtggtgattcataaattgaagga 209  Q
    |||||||||||| |||||| || ||||||||||| | |||| ||| | || || ||||||||  ||||||||||||| | |||||||||| | |||||||    
T  32320 ttgggattcatctaatttctaggagcttgaagatcggaggcattggagtgattgcatagtgtagaagatttaggatcttagtgattcatatactgaagga 32419  T
Q  210 a-ctttttaattagctctcatatacattttcaacattctatagtggaag 257  Q
    | |||| |||||  || |  ||||||||||||||||  |||||||||||    
T  32420 acctttgtaattgacttttgtatacattttcaacat--tatagtggaag 32466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 26577 - 26645
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaacc 546  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||||| |||||    
T  26577 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcacaacc 26645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 547
Target Start/End: Complemental strand, 23784 - 23726
Alignment:
Q  489 agagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||| ||||| |||||||| | ||||||||||||  ||||||||||||||||||||    
T  23784 agagttaggatccattgacaccagttgtcaacggattcgttgacaccaaatctcaaccg 23726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 5446 - 5385
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||||    
T  5446 atatatatatatgagtcaggatccgttgacaccaggtgtcaacggatttgttgacaccaaat 5385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 8358 - 8289
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaaccg 547  Q
    ||||||||||| |||||| ||||| |||||||| |||||||||| |||  || |||||||||||||||||    
T  8358 atatatatatatgagttaggatccattgacaccaggtgtcaacgtattcgttaacaccaaatctcaaccg 8289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 544
Target Start/End: Original strand, 736 - 802
Alignment:
Q  479 atatatatata-gagttaagatccgttgacacctggtgtcaacggattgattgacaccaaatctcaa 544  Q
    ||||||||||| |||| | ||||| |||||||| ||| ||||||||||  |||||||||||||||||    
T  736 atatatatatatgagtcaggatccattgacaccaggtttcaacggattcgttgacaccaaatctcaa 802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 539
Target Start/End: Original strand, 39901 - 39942
Alignment:
Q  498 atccgttgacacctggtgtcaacggattgattgacaccaaat 539  Q
    ||||||||||||| ||||||||||||||  ||||||||||||    
T  39901 atccgttgacaccaggtgtcaacggattcgttgacaccaaat 39942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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