View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_12 (Length: 465)
Name: NF21440_high_12
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 4926658 - 4926384
Alignment:
| Q |
19 |
ggtgcttcagttaatgagtgtgagaggactcaatattggtcatgtcaagtctcacttgcaggtaccacaacaaattgaagtttaagatgataatcacttt |
118 |
Q |
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| T |
4926658 |
ggtgcttcagttaatgagtgtgagaggactcaatattggtcatgtcaagtctcacttgcaggtaccacaacaaattgaagtttaagatgataatcacttt |
4926559 |
T |
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| Q |
119 |
acttttttaagctnnnnnnnntagttccttttgtaaattagtatgttttgtttgttaagttttttatctcaagattagtattatgttcaactggttacct |
218 |
Q |
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| T |
4926558 |
acttttttaagctaaaaaaaatagttccttttgtaaattagtatgttttgtttgttaagttttttatctcaagattagtattatgttcaagtggttacct |
4926459 |
T |
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| Q |
219 |
ctcttatttcaagataaaataatttttagccaaaccgaattatgcattactatgatatcgtttctccagaaattagaggattaagat |
305 |
Q |
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| T |
4926458 |
ctcttatttcaaga------------tagccaaaccgaattatgcattactatgatatcgtttctccagaaattagaggattaagat |
4926384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 343 - 449
Target Start/End: Complemental strand, 4926364 - 4926258
Alignment:
| Q |
343 |
tccacaaaattgattagtttgatttcaaacaacnnnnnnnccaaaagctaaatttattacacttaattcttccccataaaataatctaatgattattcag |
442 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4926364 |
tccacaaaattgattagtttgatttcaaacaactttttttccaaaagctaaatttattacacttaattcttccccataaaataatctaatgattattcag |
4926265 |
T |
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| Q |
443 |
ttttcat |
449 |
Q |
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||||||| |
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| T |
4926264 |
ttttcat |
4926258 |
T |
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