View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_13 (Length: 458)
Name: NF21440_high_13
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 474189 - 473766
Alignment:
| Q |
19 |
aattctctttcaaccaactcttctcaacaacaagatggttactacatgaccatcatgggttttggaacaaccaacgctgttaacggaatctttctctgtc |
118 |
Q |
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| T |
474189 |
aattctctttcaaccaactcttctcaacaacaagatggttactacatgaccatcatgggttttggaacaaccaacgctgttaacggaatctttctctgtc |
474090 |
T |
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| Q |
119 |
gtggtgatgtcaacacaacaacttgtcaaaactgtgttactgacgcggctacacagatcaaacgacgttgtacaaatcaaacagaagctattatttggta |
218 |
Q |
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| T |
474089 |
gtggtgatgtcaacacaacaacttgtcaaaactgtgttactgacgcggctacacagatcaaacgacgttgtacaaatcaaacagaagctattatttggta |
473990 |
T |
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| Q |
219 |
tgaagaatgtcttcttcgttacactaacaaattttttagatattacagtattgaacctaggttaaatcctaaaaatggtaaaaatgtttctggtgttgac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
473989 |
tgaagaatgtcttcttcgttacactaacaaattttttagatattacagtattgaacctaggttaaatcctaaaaatggtaaaaatgtttctggtgttgac |
473890 |
T |
|
| Q |
319 |
tttgaacggttcaatgaaacggtatttgggttgttgaatgagttggtggttacggcggcgaattcaaggacggcgaagaaatttggtaccggagaagtgg |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
473889 |
tttgaacggttcaatgaaacggtgtttgggttgttgaatgagttggtggttacggcggcgaattcaaggacggcgaagaaatttggtaccggagaagtgg |
473790 |
T |
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| Q |
419 |
aagtgacgagaagcatgaaggttt |
442 |
Q |
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| T |
473789 |
aagtgacgagaagcatgaaggttt |
473766 |
T |
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