View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_15 (Length: 449)
Name: NF21440_high_15
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 442
Target Start/End: Complemental strand, 21360026 - 21359598
Alignment:
| Q |
14 |
ggattctcatgagacgaggtaacagacctttccataatgcaagaattccttcttctgcatatattgttctgatggcatggatcatacccttgtacttcac |
113 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21360026 |
ggattcgcatgagacgaggtaacaggcctttccataatgcaagaactccttcttctgcatatattgttctgatggcatggatcatacccttgtacttcac |
21359927 |
T |
|
| Q |
114 |
ttcacctccctctctaccctgagccatcaaccttgttttcactacatcaaagggaccagtgcaaataggacccgctgtccctgcaaggaatcctgaaatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
21359926 |
ttcacctccctctctaccctgagccatcaaccttgttttcactacatcgaagggaccggtgcaaataggacctgccgtccctgcaaggaatcctgaaatc |
21359827 |
T |
|
| Q |
214 |
atcgactgccatggtagaagaactctaccatctccttcatttttcttccacaaaagcacatcaaaagtatttttggcggtaaacattacagattgatttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
21359826 |
atcgactgccatggtagaagaactctaccatctccttcatttttcttccacaaaagcacatcaaaagtatttttggcagtaaacatgacagattgatttg |
21359727 |
T |
|
| Q |
314 |
ttccattacgcattatagtaggagtaacaccagcccaaagcccacgaaggccttcttcctttatgatcattcctgcacaatgcacaggacctctatattt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21359726 |
ttccattacgcattatagtaggagtaacaccagcccaaagcccacgaaggccttcttcctttatgatcattcctgcacaatgcacaggacctctatattt |
21359627 |
T |
|
| Q |
414 |
caaaagctcatggcttagccctctctgct |
442 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
21359626 |
caaaagctcatggcttagccctttctgct |
21359598 |
T |
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