View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21440_high_18 (Length: 434)
Name: NF21440_high_18
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 56313473 - 56313821
Alignment:
| Q |
22 |
agaggtactactgcttcacattcagacaagaataagcagcaaaatgaaaaaatattgggaatgggatttgttgttggacaatcaccaaagacaattgatg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56313473 |
agaggtactactgcttcacattcagacaagaataagcagcaaaatgaaa---tattgggaatgggatttgttgttggacaatcaccaaagacaattgatg |
56313569 |
T |
|
| Q |
122 |
atcacatagttaacaaaatggaaggaagcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatactcctcctcc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56313570 |
atcacatagttaacaaaatggaaggaagcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatactcctcctcc |
56313669 |
T |
|
| Q |
222 |
tactaattaccgttcagaagaggaagaaggattgatgatgat---gcagcagcagcatcaacctaggcacctagtacaatatgctgctgcgggaaactct |
318 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
56313670 |
tactaattaccgttcagaagaagaagaaggattgatgattatgcagcagcagcagcatcaacctaggcacctagtacaatattcagctgcgggaaactct |
56313769 |
T |
|
| Q |
319 |
ctgttagtctccgcttgtggtggcggcgggggcgccattttccctgtctcagctt |
373 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
56313770 |
ctgttagtctccgc---tggtggcggcgggggcgtcattttccctgtctcagctt |
56313821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University