View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_high_22 (Length: 414)

Name: NF21440_high_22
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_high_22
NF21440_high_22
[»] scaffold0470 (1 HSPs)
scaffold0470 (17-399)||(4894-5274)
[»] chr8 (16 HSPs)
chr8 (17-399)||(6615608-6615988)
chr8 (17-400)||(6750140-6750520)
chr8 (17-400)||(6756931-6757311)
chr8 (208-400)||(6659093-6659286)
chr8 (208-400)||(6739495-6739688)
chr8 (17-82)||(6659528-6659593)
chr8 (17-82)||(6739930-6739995)
chr8 (221-319)||(13841860-13841957)
chr8 (238-320)||(2627203-2627285)
chr8 (241-301)||(6189682-6189742)
chr8 (235-322)||(34194586-34194673)
chr8 (236-317)||(108220-108301)
chr8 (241-318)||(13964451-13964528)
chr8 (222-317)||(8793755-8793850)
chr8 (248-320)||(17871792-17871864)
chr8 (237-265)||(37036153-37036181)
[»] chr7 (7 HSPs)
chr7 (64-399)||(19058755-19059090)
chr7 (238-320)||(42117489-42117571)
chr7 (221-322)||(37491285-37491386)
chr7 (238-322)||(46578294-46578378)
chr7 (221-320)||(7456435-7456534)
chr7 (235-315)||(16777918-16777998)
chr7 (218-322)||(48392893-48392996)
[»] chr2 (15 HSPs)
chr2 (204-318)||(43542913-43543027)
chr2 (235-322)||(43341155-43341242)
chr2 (205-359)||(40691131-40691286)
chr2 (235-322)||(42579045-42579132)
chr2 (241-320)||(44274574-44274652)
chr2 (221-279)||(45472422-45472480)
chr2 (235-320)||(22450956-22451041)
chr2 (239-279)||(14952795-14952835)
chr2 (235-322)||(10041569-10041656)
chr2 (240-295)||(40205121-40205176)
chr2 (235-322)||(43341156-43341243)
chr2 (238-320)||(41153144-41153226)
chr2 (238-318)||(5559460-5559540)
chr2 (221-261)||(33407406-33407446)
chr2 (234-322)||(37182843-37182931)
[»] chr1 (12 HSPs)
chr1 (224-317)||(48010148-48010241)
chr1 (248-320)||(15290617-15290689)
chr1 (205-301)||(22340925-22341021)
chr1 (221-320)||(28038839-28038938)
chr1 (221-322)||(38834623-38834724)
chr1 (234-318)||(20711652-20711736)
chr1 (223-322)||(27549059-27549158)
chr1 (221-320)||(39940516-39940614)
chr1 (248-322)||(45239018-45239092)
chr1 (238-279)||(47446701-47446742)
chr1 (240-320)||(29673833-29673913)
chr1 (240-320)||(50155333-50155413)
[»] chr5 (11 HSPs)
chr5 (237-318)||(12922403-12922484)
chr5 (238-320)||(7613387-7613469)
chr5 (221-320)||(13654538-13654636)
chr5 (235-318)||(30489127-30489210)
chr5 (238-320)||(13391560-13391642)
chr5 (238-279)||(7313860-7313901)
chr5 (221-318)||(40100099-40100195)
chr5 (221-320)||(5110548-5110647)
chr5 (267-320)||(32911499-32911552)
chr5 (238-318)||(1098657-1098736)
chr5 (234-318)||(18475327-18475411)
[»] chr3 (7 HSPs)
chr3 (235-322)||(7672720-7672807)
chr3 (205-322)||(473765-473880)
chr3 (241-317)||(4980305-4980381)
chr3 (235-264)||(50603551-50603580)
chr3 (241-317)||(27707210-27707286)
chr3 (238-318)||(29241511-29241591)
chr3 (221-281)||(52168438-52168498)
[»] chr6 (2 HSPs)
chr6 (239-320)||(16120995-16121076)
chr6 (210-301)||(33122903-33122994)
[»] chr4 (17 HSPs)
chr4 (205-301)||(5924495-5924591)
chr4 (241-317)||(19596030-19596106)
chr4 (235-322)||(25856037-25856124)
chr4 (235-279)||(2254023-2254067)
chr4 (222-322)||(5656526-5656626)
chr4 (235-299)||(19754241-19754305)
chr4 (235-299)||(19785501-19785565)
chr4 (238-301)||(2401069-2401132)
chr4 (239-318)||(46543609-46543688)
chr4 (222-264)||(13051808-13051850)
chr4 (235-281)||(17657975-17658021)
chr4 (238-300)||(42832243-42832305)
chr4 (235-320)||(4386352-4386436)
chr4 (211-320)||(46462382-46462491)
chr4 (235-264)||(48860556-48860585)
chr4 (211-259)||(134586-134634)
chr4 (235-299)||(42013172-42013236)
[»] scaffold1266 (1 HSPs)
scaffold1266 (238-320)||(159-241)
[»] scaffold0635 (1 HSPs)
scaffold0635 (235-322)||(5414-5501)
[»] scaffold0263 (1 HSPs)
scaffold0263 (238-320)||(19822-19904)


Alignment Details
Target: scaffold0470 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 5274 - 4894
Alignment:
Q  17 catgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacgcatgaaatcgaacattaaactctccaatagacacgtacatatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  5274 catgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacacatgaaatcgaactttaaactctccaatagac--gtacatatt 5177  T
Q  117 acacagtaaccacttacgctacatcaaaactgtggcttttgccacttattccaccatatcaaatgaggtagccaaacacaaacaaaagtactactccgat 216  Q
    ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5176 acacaataaccacttacgctacaccagaactgtggcttctgccacttattccaccatatcaaatgaggtagccaaacacaaacaaaagtactgctccgat 5077  T
Q  217 cttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaa 316  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |||||    
T  5076 cttaattataagataatatttactatttagattcattcaataaatgatacatttagtctatattaagaactaaatacattaattaccgaatgaacctaaa 4977  T
Q  317 aagtaactatctcttgtagttgaaaccgaagggagtattataagacaactacgagcatcattttctgcaacacttcacacagg 399  Q
    | |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||    
T  4976 aggtaactttctcttatagttgaaaccaaagggagtattataagacaactacgagcaacattttttggcacacttcacacagg 4894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 6615988 - 6615608
Alignment:
Q  17 catgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacgcatgaaatcgaacattaaactctccaatagacacgtacatatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  6615988 catgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacacatgaaatcgaactttaaactctccaatagac--gtacatatt 6615891  T
Q  117 acacagtaaccacttacgctacatcaaaactgtggcttttgccacttattccaccatatcaaatgaggtagccaaacacaaacaaaagtactactccgat 216  Q
    ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6615890 acacaataaccacttacgctacaccagaactgtggcttctgccacttattccaccatatcaaatgaggtagccaaacacaaacaaaagtactgctccgat 6615791  T
Q  217 cttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaa 316  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |||||    
T  6615790 cttaattataagataatatttactatttagattcattcaataaatgatacatttagtctatattaagaactaaatacattaattaccgaatgaacctaaa 6615691  T
Q  317 aagtaactatctcttgtagttgaaaccgaagggagtattataagacaactacgagcatcattttctgcaacacttcacacagg 399  Q
    | |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||    
T  6615690 aggtaactttctcttatagttgaaaccaaagggagtattataagacaactacgagcaacattttttggcacacttcacacagg 6615608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 6750520 - 6750140
Alignment:
Q  17 catgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacgcatgaaatcgaacattaaactctccaatagacacgtacatatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||| |||||| |  |||||| |   ||||||||    
T  6750520 catgcttgccaatacataacatcaaaaagctaggaactttccgccaatattttaacacatggaatc-aactttaaacccaacaatagtct--tacatatt 6750424  T
Q  117 acacagtaaccacttacgctacatcaaaactgtggctttt-------gccacttattccaccatatcaaatgaggtagccaaacacaaacaaaagtacta 209  Q
    ||||| ||||||||| || | || ||  ||| | | || |       |||| ||||||||||||||||||||||||| |||||||        |||||||    
T  6750423 acacactaaccacttgcgttgcaccaggactctagtttctagtttctgccatttattccaccatatcaaatgaggtaaccaaaca--------agtacta 6750332  T
Q  210 ctccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcattta-ccaaatg 308  Q
    || || ||||||||| || |||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||   |||||    
T  6750331 ctgcggtcttaattaaaaaataacatttactttttagattcattctataaatgatacatttagtatatattaagaactaaatacattatttattgaaatg 6750232  T
Q  309 aatctaaaaagtaactatctcttgtagttgaaaccgaagggagtattataagacaactacgagcatcattttctgcaacacttcacacaggt 400  Q
    || ||||||| ||||| |||||| ||||| ||||| |||||||||| |||| ||||||||||||| |||||||| |||||  ||||||||||    
T  6750231 aacctaaaaactaactttctcttatagtttaaacctaagggagtatcataacacaactacgagcaacattttctacaacagctcacacaggt 6750140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 6757311 - 6756931
Alignment:
Q  17 catgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacgcatgaaatcgaacattaaactctccaatagacacgtacatatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||| |||||| |  |||||| |   ||||||||    
T  6757311 catgcttgccaatacataacatcaaaaagctaggaactttccgccaatattttaacacatggaatc-aactttaaacccaacaatagtct--tacatatt 6757215  T
Q  117 acacagtaaccacttacgctacatcaaaactgtggctttt-------gccacttattccaccatatcaaatgaggtagccaaacacaaacaaaagtacta 209  Q
    ||||| ||||||||| || | || ||  ||| | | || |       |||| ||||||||||||||||||||||||| |||||||        |||||||    
T  6757214 acacactaaccacttgcgttgcaccaggactctagtttctagtttctgccatttattccaccatatcaaatgaggtaaccaaaca--------agtacta 6757123  T
Q  210 ctccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcattta-ccaaatg 308  Q
    || || ||||||||| || |||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||   |||||    
T  6757122 ctgcggtcttaattaaaaaataacatttactttttagattcattctataaatgatacatttagtatatattaagaactaaatacattatttattgaaatg 6757023  T
Q  309 aatctaaaaagtaactatctcttgtagttgaaaccgaagggagtattataagacaactacgagcatcattttctgcaacacttcacacaggt 400  Q
    || ||||||| ||||| |||||| ||||| ||||| |||||||||| |||| ||||||||||||| |||||||| |||||  ||||||||||    
T  6757022 aacctaaaaactaactttctcttatagtttaaacctaagggagtatcataacacaactacgagcaacattttctacaacagctcacacaggt 6756931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 208 - 400
Target Start/End: Complemental strand, 6659286 - 6659093
Alignment:
Q  208 tactccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttac-caaa 306  Q
    ||||||| |||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||  |||    
T  6659286 tactccggtcttaattataaaataacatttactttttagattcattctataaatgatacatttagtccatattatgaactaaatacattatttactgaaa 6659187  T
Q  307 tgaatctaaaaagtaactatctcttgtagttgaaaccgaagggagtattataagacaactacgagcatcattttctgcaacacttcacacaggt 400  Q
    |||| ||||||| ||||| |||||| ||||| ||||| |||||||||| |||| |||||||||||||  ||||||| |||||  ||||||||||    
T  6659186 tgaacctaaaaactaactttctcttatagtttaaacctaagggagtatcataacacaactacgagcaaaattttctacaacagctcacacaggt 6659093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 208 - 400
Target Start/End: Complemental strand, 6739688 - 6739495
Alignment:
Q  208 tactccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttac-caaa 306  Q
    ||||||| |||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||  |||    
T  6739688 tactccggtcttaattataaaataacatttactttttagattcattctataaatgatacatttagtccatattatgaactaaatacattatttactgaaa 6739589  T
Q  307 tgaatctaaaaagtaactatctcttgtagttgaaaccgaagggagtattataagacaactacgagcatcattttctgcaacacttcacacaggt 400  Q
    |||| ||||||| ||||| |||||| ||||| ||||| |||||||||| |||| |||||||||||||  ||||||| |||||  ||||||||||    
T  6739588 tgaacctaaaaactaactttctcttatagtttaaacctaagggagtatcataacacaactacgagcaaaattttctacaacagctcacacaggt 6739495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 6659593 - 6659528
Alignment:
Q  17 catgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacgcatgaaatc 82  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||    
T  6659593 catgcttgccaatacataacatcaaaaagctaggaactttccaccaatattttaacacatggaatc 6659528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 6739995 - 6739930
Alignment:
Q  17 catgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacgcatgaaatc 82  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||    
T  6739995 catgcttgccaatacataacatcaaaaagctaggaactttccaccaatattttaacacatggaatc 6739930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 13841860 - 13841957
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaag 319  Q
    ||||||||  || |||||||||||||||||||||||||||||||  |||||||||| | ||  ||||| ||||||||||||   |||||| ||||||||    
T  13841860 attataagcaaaaatttactttttaaattcattcaataaatgatgtatttagtctaca-tataaactacatacatcatttattgaatgaacctaaaaag 13841957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 2627285 - 2627203
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||| ||||||||||||||| |  |||||||||||||||   || |||||||| |||||   ||||||||||||||||    
T  2627285 actttttaagttcattcaataaatggtgtatttagtctatattattgaccaaatacattatttattgaatgaatctaaaaagt 2627203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 6189742 - 6189682
Alignment:
Q  241 ttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcattta 301  Q
    ||||| ||||||||||||||||||  |||||||||||||||   || ||||||||||||||    
T  6189742 ttttagattcattcaataaatgatgtatttagtctatattattgaccaaatacatcattta 6189682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 34194586 - 34194673
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    ||||||||||| ||||||||||| ||||||  || | ||| |||||| |||||| |||||||||| |   |||||| |||||||||||    
T  34194586 tttactttttagattcattcaattaatgatgtatgtggtccatattatgaactacatacatcattaattgaatgaacctaaaaagtaa 34194673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 108220 - 108301
Alignment:
Q  236 ttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaa 317  Q
    ||||||||||  |||||| |||| |||||| |||| ||||||||  ||| | |||||||| | ||| |||||||||||||||    
T  108220 ttactttttaggttcattgaatatatgatatatttggtctatatatagaccaaaatacattaattatcaaatgaatctaaaa 108301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 13964451 - 13964528
Alignment:
Q  241 ttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    ||||||||||||||||||||||||  || | ||||||||||   || |  ||||||||||||  ||||||||||||||    
T  13964451 ttttaaattcattcaataaatgatgtatgtggtctatattatagaccatgtacatcatttactcaatgaatctaaaaa 13964528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 317
Target Start/End: Complemental strand, 8793850 - 8793755
Alignment:
Q  222 ttataagataatattt-actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaa 317  Q
    |||||||| ||||||| |||||||  |||||||  |||||||||  |||||||||||||||   || |||||||||| ||||  |||||||||||||    
T  8793850 ttataaga-aatatttgacttttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaatctaaaa 8793755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 17871864 - 17871792
Alignment:
Q  248 ttcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    |||||||| ||||||||  |||||||||||||||   || ||||||||||||||   |||||| |||||||||    
T  17871864 ttcattcattaaatgatgtatttagtctatattattgaccaaatacatcatttaatgaatgaacctaaaaagt 17871792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 37036181 - 37036153
Alignment:
Q  237 tactttttaaattcattcaataaatgata 265  Q
    |||||||||||||||||||||||||||||    
T  37036181 tactttttaaattcattcaataaatgata 37036153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 64 - 399
Target Start/End: Original strand, 19058755 - 19059090
Alignment:
Q  64 tattttaacgcatgaaatcgaacattaaactctccaatagacacgtacatattacacagtaaccacttacgctacatcaaaactgtggcttttgccactt 163  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||  ||| ||||||||||| |||||||||||||||| || |||||| | || ||||||||    
T  19058755 tattttaacacatgaaatcgaactttaaactctccaataaac--gtatatattacacagcaaccacttacgctacaccagaactgtagtttctgccactt 19058852  T
Q  164 attccaccatatcaaatgaggtagccaaacacaaacaaa--agtactactccgatcttaattataagataatatttactttttaaattcattcaataaat 261  Q
    ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19058853 attgcaccatatcaaatgaggtagccaaacacaaacaaattagtactactccgatcttaattataagataatatttactttttagattcattcaataaat 19058952  T
Q  262 gatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaactatctcttgtagttgaaaccgaagggagtattataaga 361  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19058953 gatacatttagtctatattaagaactaaatacatcatttactaaatgaacttaaaaagtaactatctcttatagttgaaaccgaagggagtattataaga 19059052  T
Q  362 caactacgagcatcattttctgcaacacttcacacagg 399  Q
    |||||||||||  |||||||||||||||||||||||||    
T  19059053 caactacgagccacattttctgcaacacttcacacagg 19059090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 42117489 - 42117571
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||  ||||| |||||||||||  ||||||||||||||| | |||| ||||||||||||   |||||| |||||||||    
T  42117489 actttttaggttcatccaataaatgatgtatttagtctatattagggactagatacatcatttattgaatgaacctaaaaagt 42117571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 37491285 - 37491386
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||  || |||||||||||| ||| ||| ||||||||||  || |||||||||| |   || | ||||||||||||  |||||||||||||||||    
T  37491285 attataagcaaaaatttactttttagatttattaaataaatgatgtatgtagtctatataagtgaccatatacatcatttattaaatgaatctaaaaagt 37491384  T
Q  321 aa 322  Q
    ||    
T  37491385 aa 37491386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 46578294 - 46578378
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    |||||||||||||||||||| ||||||  || | || ||||||| |||||| |||||||||| |   |||||| |||||||||||    
T  46578294 actttttaaattcattcaattaatgatgtatgtggtttatattatgaactacatacatcattaattgaatgaacctaaaaagtaa 46578378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 7456435 - 7456534
Alignment:
Q  221 attataagataatattt-actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaag 319  Q
    ||||||||| ||||||| |||||||| |||||||  |||||||||  || ||||||||||| | ||| | |||||| | ||||  |||||||||||||||    
T  7456435 attataaga-aatatttgactttttagattcattgtataaatgatgtatctagtctatatttacaacaagatacattaattactcaatgaatctaaaaag 7456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 16777918 - 16777998
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaa 315  Q
    |||| |||||| ||||||| | ||||||||  || ||||||||| |||  |||| ||||||||||||  ||||||||||||    
T  16777918 tttaatttttagattcatttattaaatgatgtatgtagtctataataaagactacatacatcatttaataaatgaatctaa 16777998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 48392996 - 48392893
Alignment:
Q  218 ttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaa 317  Q
    |||||||||||  ||| |||||||||||| |||||||||| ||||||  || | || ||||||| |||  | |||||||| | |  ||||||||||||||    
T  48392996 ttaattataagcaaat-tttactttttaagttcattcaattaatgatgtatgtggtatatattatgaatcacatacatcactaattaaatgaatctaaaa 48392898  T
Q  318 agtaa 322  Q
    |||||    
T  48392897 agtaa 48392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 43542913 - 43543027
Alignment:
Q  204 gtactactccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttacc 303  Q
    |||||||||||||||  ||||||||| ||  || |||||||| |||||||||||||||||| ||| |||| |||||||||||| | ||||||||||||      
T  43542913 gtactactccgatctctattataagagaaagttcactttttagattcattcaataaatgatgcatctagtttatattaagaacgagatacatcatttatt 43543012  T
Q  304 aaatgaatctaaaaa 318  Q
     |||||| |||||||    
T  43543013 gaatgaacctaaaaa 43543027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 43341155 - 43341242
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    ||||||||||| |||||||||||||||||| ||| | || |||| || |||||| ||| ||||||||  |||||||||||||||||||    
T  43341155 tttactttttagattcattcaataaatgatgcatgtggtttataatatgaactacatatatcatttattaaatgaatctaaaaagtaa 43341242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 359
Target Start/End: Original strand, 40691131 - 40691286
Alignment:
Q  205 tactactccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttacca 304  Q
    |||||||| ||||||| |||||| | ||  || |||||||| || ||||||||||||||   || ||||||||||||  ||||| ||||||||||||       
T  40691131 tactactctgatcttatttataaaagaaagttaactttttagatccattcaataaatgacgtatctagtctatattagaaactagatacatcatttattg 40691230  T
Q  305 aatgaatctaaaaag-taactatctcttgtagttgaaaccgaagggagtattataa 359  Q
    ||| ||||| ||||| ||||| |||||| ||  ||| || |||||||||| |||||    
T  40691231 aataaatctgaaaagttaactttctcttataaatgagacagaagggagtactataa 40691286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 42579045 - 42579132
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    ||||||||||||||||||| ||| ||||||  || ||||| |||||| |||| | |||||||||| |   ||||||||||||||||||    
T  42579045 tttactttttaaattcatttaattaatgatgtatgtagtccatattatgaaccacatacatcattaattgaatgaatctaaaaagtaa 42579132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 44274574 - 44274652
Alignment:
Q  241 ttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||| ||||||||||||||||||| || ||||||||||  || |||| ||||||||||||   ||||||||||||||||    
T  44274574 ttttagattcattcaataaatgatatatgtagtctatatacag-actacatacatcatttattgaatgaatctaaaaagt 44274652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 45472422 - 45472480
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatat 279  Q
    ||||||||  || |||||||||||||||||||||||||||||||  || ||||||||||    
T  45472422 attataagtaaaaatttactttttaaattcattcaataaatgatgtatgtagtctatat 45472480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 22450956 - 22451041
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    |||||||| || ||||||||||||||||||  || || ||||||||| ||| || |||||||||| |   ||||||||||||||||    
T  22450956 tttactttatagattcattcaataaatgatgtatctactctatattaggaattagatacatcattgaatgaatgaatctaaaaagt 22451041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 14952795 - 14952835
Alignment:
Q  239 ctttttaaattcattcaataaatgatacatttagtctatat 279  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  14952795 ctttttaaattcattcaataaatgatgcatgtagtctatat 14952835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 10041656 - 10041569
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    |||||||||||| |||||||||| ||||||  || | ||||||||||  ||| | |||||||||| |  |||||||||||||| ||||    
T  10041656 tttactttttaagttcattcaattaatgatgtatgtggtctatattataaaccacatacatcattaattaaatgaatctaaaatgtaa 10041569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 40205121 - 40205176
Alignment:
Q  240 tttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacat 295  Q
    ||||| |||||||| ||||||  ||| ||||||| |||||||||||||||||||||    
T  40205121 ttttttaattcatttaataaacaatatatttagtttatattaagaactaaatacat 40205176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 43341243 - 43341156
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    ||||||||||| ||||||| ||||||||||| || ||||  ||||||  ||| | || |||||||||   ||||||||||||||||||    
T  43341243 tttactttttagattcatttaataaatgatatatgtagttcatattataaaccacatgcatcatttattgaatgaatctaaaaagtaa 43341156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 41153144 - 41153226
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    |||||||  |||||||  |||||||||  |||| ||||||||||  ||| |||||||||| ||||  ||||||||||||||||    
T  41153144 acttttttgattcattgcataaatgatgtatttggtctatattataaaccaaatacatcaattactcaatgaatctaaaaagt 41153226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 5559540 - 5559460
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    |||||||| ||||||||| ||||| ||  ||||||||||| |||   || ||||||| ||||||  |||||||||||||||    
T  5559540 actttttatattcattcattaaattatgtatttagtctatgttattgacaaaatacaacatttaataaatgaatctaaaaa 5559460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 33407406 - 33407446
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaat 261  Q
    ||||||||| || ||||||||||||| ||||||||||||||    
T  33407406 attataagagaaaatttactttttaagttcattcaataaat 33407446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 37182931 - 37182843
Alignment:
Q  234 atttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    |||||| ||||||||||||||| ||||||||  || | ||||||| |||   ||| ||||||||||||   ||||||||||||| ||||    
T  37182931 atttacattttaaattcattcattaaatgatgtatgtggtctataataaaggctatatacatcatttaattaatgaatctaaaatgtaa 37182843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 48010148 - 48010241
Alignment:
Q  224 ataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaa 317  Q
    |||||||||  ||||| ||||||||| ||||||||||| ||| ||||  ||||||||||||| ||||||||| |||||  ||||||||||||||    
T  48010148 ataagataaagtttacattttaaatttattcaataaataatatattttatctatattaagaattaaatacattatttattaaatgaatctaaaa 48010241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 15290617 - 15290689
Alignment:
Q  248 ttcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    |||||||| ||||||||  |||||||||||||||   || ||||||||||||||  |||||||||||||||||    
T  15290617 ttcattcattaaatgatgtatttagtctatattattgaccaaatacatcatttattaaatgaatctaaaaagt 15290689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 22340925 - 22341021
Alignment:
Q  205 tactactccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcattta 301  Q
    |||||||||| | | |||||||||||||  || |||||||| | ||||| ||||||||||  ||  ||||||||||| |||||| ||||||||||||    
T  22340925 tactactccggtttcaattataagataaagttaactttttagactcattgaataaatgatgtatcaagtctatattaggaactagatacatcattta 22341021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 28038839 - 28038938
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||  || ||| |||||||| ||||||||| |||||| |  |||| ||| ||| ||  ||||||||||||||||||  |||||||||||||||||    
T  28038839 attataagcaaaaattaactttttagattcattcattaaatgttgtatttggtcaataatataaactaaatacatcatttaataaatgaatctaaaaagt 28038938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 38834623 - 38834724
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||  || ||||| |||||| ||||||| ||||||||||  || |||||||||| ||  || | ||||||||||||   ||||||||||||||||    
T  38834623 attataagcaaaaatttattttttagattcattaaataaatgatgtatatagtctatataaatgaccatatacatcatttattgaatgaatctaaaaagt 38834722  T
Q  321 aa 322  Q
    ||    
T  38834723 aa 38834724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 20711736 - 20711652
Alignment:
Q  234 atttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    |||||||||||||| ||||||||||||| ||  || || | |||||||  ||||||||||||||||||  |||| || |||||||    
T  20711736 atttactttttaaactcattcaataaataatgtatctaatatatattagaaactaaatacatcatttaataaatcaacctaaaaa 20711652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 322
Target Start/End: Original strand, 27549059 - 27549158
Alignment:
Q  223 tataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    ||||||| ||| |||||||||||| |||||||||| ||||||  || | ||| |||||| |||| | |||||||||| |   |||||| |||||||||||    
T  27549059 tataagaaaatttttactttttaagttcattcaattaatgatgtatgtggtccatattatgaaccacatacatcattaattgaatgaacctaaaaagtaa 27549158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 39940614 - 39940516
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||  || |||||||||||| ||||||||||||||| ||  || ||||||||| ||  ||| | ||||||||||||  ||||||| |||||||||    
T  39940614 attataagtaaaaatttactttttagattcattcaataaataatgtatgtagtctata-tataaaccatatacatcatttattaaatgaacctaaaaagt 39940516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 45239092 - 45239018
Alignment:
Q  248 ttcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    |||||||||| ||||||  || | |||||||||| |||| | |||||||||| |  |||||||||||||||||||    
T  45239092 ttcattcaattaatgatgtatgtggtctatattatgaaccacatacatcattgattaaatgaatctaaaaagtaa 45239018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 47446742 - 47446701
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatat 279  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  47446742 actttttaaattcattcaataaatgatgtatgtagtctatat 47446701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 29673913 - 29673833
Alignment:
Q  240 tttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    |||||| ||||||||| | ||||||  || |||||||||||| |||| | ||||||| || | | ||||||||||||||||    
T  29673913 tttttagattcattcatttaatgatgtatgtagtctatattatgaacaacatacatcgttaaacgaatgaatctaaaaagt 29673833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 50155333 - 50155413
Alignment:
Q  240 tttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||| ||||||||  |||||||||  |||| ||||||||||   || |||||||||| ||||  ||||||||||||||||    
T  50155333 ttttttaattcattgcataaatgatgtatttggtctatattatagaccaaatacatcaattactcaatgaatctaaaaagt 50155413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 12922484 - 12922403
Alignment:
Q  237 tactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||  ||  ||||||||||||||   ||||||| ||||||    
T  12922484 tactttttaaattcattcaataaatgatatatttggtctatattattaaacaaatacatcatttattgaatgaatataaaaa 12922403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 7613387 - 7613469
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||| |||||||| ||||||    |||||||||||||||  ||| ||||||||||||||  |||||||||||||||||    
T  7613387 actttttaagttcattcattaaatgcagtatttagtctatattattaaccaaatacatcatttattaaatgaatctaaaaagt 7613469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 13654636 - 13654538
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||  || ||| |||||||||||||||||||||||||||  |||||||||||| || | || | ||||||||||||   |||||| |||||||||    
T  13654636 attataagcaaaaattcactttttaaattcattcaataaatgatgtatttagtctata-tatggaccacatacatcatttattgaatgaacctaaaaagt 13654538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 30489210 - 30489127
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    |||| |||||||||||||||||| ||||||| || | |||||||||| |||||| |||||| ||| |  ||||||| |||||||    
T  30489210 tttattttttaaattcattcaattaatgatatatgtggtctatattatgaactatatacataattaattaaatgaacctaaaaa 30489127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 13391642 - 13391560
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||  |||||||||||||| ||  |||||||||||||||   || ||||||||||||||   ||||||||||||||||    
T  13391642 actttttaggttcattcaataaattatgtatttagtctatattattgaccaaatacatcatttattgaatgaatctaaaaagt 13391560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 7313860 - 7313901
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatat 279  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  7313860 actttttaaattcattcaataaatgatatatgtagtctatat 7313901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 40100099 - 40100195
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    ||||||||  || ||| |||||||||||||||| ||||||||||   | | ||||||| || |||||| |||||||||||||  ||||||||||||||    
T  40100099 attataagcaaaaattgactttttaaattcatttaataaatgatgtgtgtggtctata-tatgaactacatacatcatttactgaatgaatctaaaaa 40100195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 5110548 - 5110647
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||| ||  || |||||||| ||||||||||||||| ||| || || |||||||||  ||  ||||||||||||||   |||||| |||||||||    
T  5110548 attataagagaaagttcactttttagattcattcaataaataatatatataatctatattagaaatcaaatacatcatttattgaatgaacctaaaaagt 5110647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 32911552 - 32911499
Alignment:
Q  267 atttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    |||||||||||||||   |||||||||||||||||  ||||||| |||||||||    
T  32911552 atttagtctatattatagactaaatacatcatttaataaatgaacctaaaaagt 32911499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 1098657 - 1098736
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    |||||||| ||||||||||||||||||  || | ||||||||  || |||| |||||| |||||  |||||||||||||||    
T  1098657 actttttagattcattcaataaatgatgtatgtggtctatatatag-actacatacattatttattaaatgaatctaaaaa 1098736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 18475411 - 18475327
Alignment:
Q  234 atttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    ||||||||||||||||||||  || ||||||  || |  | ||||||| || ||| ||||||||||||  |||||||||||||||    
T  18475411 atttactttttaaattcatttgatgaatgatgtatctgatttatattaggagctagatacatcatttattaaatgaatctaaaaa 18475327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 7672807 - 7672720
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    ||||||||||| ||||||||||| ||||||  || |||||||||||| |||||| ||| |||||| |   ||||||||||||||||||    
T  7672807 tttactttttagattcattcaattaatgatttatgtagtctatattatgaactagatatatcattaattgaatgaatctaaaaagtaa 7672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 473880 - 473765
Alignment:
Q  205 tactactccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttacca 304  Q
    ||||||||||||||  ||||||||| |||  ||| |||||| ||| ||||  ||||||||| | ||  |||||||||||||||| |||||| ||||||      
T  473880 tactactccgatctctattataagagaat--ttattttttagatttattcggtaaatgatatacttgatctatattaagaactagatacattatttactc 473783  T
Q  305 aatgaatctaaaaagtaa 322  Q
    ||||||  ||||||||||    
T  473782 aatgaacataaaaagtaa 473765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 4980305 - 4980381
Alignment:
Q  241 ttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaa 317  Q
    ||||| ||||||||||||||||||| || | ||||||| |||  |||| ||||||||||||   |||||||||||||    
T  4980305 ttttagattcattcaataaatgatatatgttgtctataataaagactacatacatcatttattgaatgaatctaaaa 4980381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 50603551 - 50603580
Alignment:
Q  235 tttactttttaaattcattcaataaatgat 264  Q
    ||||||||||||||||||||||||||||||    
T  50603551 tttactttttaaattcattcaataaatgat 50603580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 27707210 - 27707286
Alignment:
Q  241 ttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaa 317  Q
    ||||||||||||||||||||||||| || | ||||| | |||  || | ||||||||||||   |||||||||||||    
T  27707210 ttttaaattcattcaataaatgatatatattgtctacaataaagaccacatacatcatttattgaatgaatctaaaa 27707286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 29241591 - 29241511
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    |||||||| ||||||||||||||||||  |||| ||||||||||   |  |||| |||||||||  ||||||| |||||||    
T  29241591 actttttagattcattcaataaatgatgtatttggtctatattactgatcaaatgcatcatttattaaatgaacctaaaaa 29241511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 52168498 - 52168438
Alignment:
Q  221 attataagataatatttactttttaaattcattcaataaatgatacatttagtctatatta 281  Q
    ||||||||| || |||||||||| | ||||||||||||||||||  ||||| | |||||||    
T  52168498 attataagagaaaatttacttttaagattcattcaataaatgatgtatttaatatatatta 52168438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 16120995 - 16121076
Alignment:
Q  239 ctttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||||||||||||||||||||  | || ||||||||||   || ||||||||||||||   ||||||||||||||||    
T  16120995 ctttttaaattcattcaataaatgatgtacttggtctatattattgaccaaatacatcatttatttaatgaatctaaaaagt 16121076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 33122994 - 33122903
Alignment:
Q  210 ctccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcattta 301  Q
    |||||||||||| | ||||| | | || |||||||| ||||||| |||||||||| ||| | ||| ||||||  ||| ||||||||||||||    
T  33122994 ctccgatcttaaatgtaagaaatttttcactttttagattcatttaataaatgatgcatgtggtccatattataaaccaaatacatcattta 33122903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 5924495 - 5924591
Alignment:
Q  205 tactactccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcattta 301  Q
    |||||||  ||||||  |||||||||||  || | |||||||||||||||||||||| ||  || || |||||||||||||||| |||||| |||||    
T  5924495 tactactatgatctttgttataagataaagttaattttttaaattcattcaataaataatgtatctaatctatattaagaactacatacattattta 5924591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 19596106 - 19596030
Alignment:
Q  241 ttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaa 317  Q
    ||||||||||||||||||||||||| || |  |||||||||| ||  ||||||||||||||  ||||||| ||||||    
T  19596106 ttttaaattcattcaataaatgatatatatgatctatattaaaaatcaaatacatcatttattaaatgaacctaaaa 19596030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 25856124 - 25856037
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    |||||||||||  |||||||||| ||||||  || | |||||||||| |||| | |||||||||| |  |||||||||||||||||||    
T  25856124 tttactttttaggttcattcaattaatgatgtatgtggtctatattatgaaccacatacatcattgattaaatgaatctaaaaagtaa 25856037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 2254067 - 2254023
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatat 279  Q
    |||| |||||||||||||||||||||||||| || ||||||||||    
T  2254067 tttattttttaaattcattcaataaatgatatatgtagtctatat 2254023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 5656626 - 5656526
Alignment:
Q  222 ttataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagta 321  Q
    |||||||| || ||| || ||||| ||| ||||||||||||||  || | ||||| ||| |||||||||||||||||| |   ||||||||||||| |||    
T  5656626 ttataagagaaaattaacattttagattaattcaataaatgatgtatctggtctacattgagaactaaatacatcattaatttaatgaatctaaaatgta 5656527  T
Q  322 a 322  Q
    |    
T  5656526 a 5656526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 19754241 - 19754305
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatt 299  Q
    ||||||||||| ||||||||||| ||||||| || | ||| |||||| |||||| ||||||||||    
T  19754241 tttactttttagattcattcaattaatgatatatgtggtccatattatgaactacatacatcatt 19754305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 19785565 - 19785501
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatt 299  Q
    ||||||||||| ||||||||||| ||||||| || | ||| |||||| |||||| ||||||||||    
T  19785565 tttactttttagattcattcaattaatgatatatgtggtccatattatgaactacatacatcatt 19785501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 2401069 - 2401132
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcattta 301  Q
    |||||||||||||||||||||||||||  |||| ||| ||| ||   |||||||||||||||||    
T  2401069 actttttaaattcattcaataaatgatgtatttggtcaataatatagactaaatacatcattta 2401132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 46543609 - 46543688
Alignment:
Q  239 ctttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaa 318  Q
    ||||||||||| ||||||| ||| ||  |||| ||| |||||| || ||| ||||||||||||  |||||||||||||||    
T  46543609 ctttttaaatttattcaatgaataatgtatttggtcaatattatgagctatatacatcatttattaaatgaatctaaaaa 46543688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 13051850 - 13051808
Alignment:
Q  222 ttataagataatatttactttttaaattcattcaataaatgat 264  Q
    |||||||| || |||||||||||||||||||| ||||||||||    
T  13051850 ttataagagaaaatttactttttaaattcattaaataaatgat 13051808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 17658021 - 17657975
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatatta 281  Q
    |||| |||||| ||||||||||||||||||| || ||||||||||||    
T  17658021 tttattttttagattcattcaataaatgatatatgtagtctatatta 17657975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 42832305 - 42832243
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcattt 300  Q
    ||||||||| ||||||||| ||||||   ||||||| ||||||| |||||| |||||||||||    
T  42832305 actttttaatttcattcaacaaatgactgatttagtttatattaggaactagatacatcattt 42832243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 4386436 - 4386352
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    ||||||||||| ||||||||||||||||||  || |||| |||||  || || | ||||||||||||  |||| ||||||||||||    
T  4386436 tttactttttagattcattcaataaatgatctatgtagtttatatatag-accacatacatcatttaataaattaatctaaaaagt 4386352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 46462382 - 46462491
Alignment:
Q  211 tccgatcttaattataagataatatttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaa 310  Q
    ||||||||||||||||||  | | || |||||||| ||||||| ||||||||||  || | || |||| |||  |||| ||||||||||||   ||||||    
T  46462382 tccgatcttaattataagcaacttttcactttttagattcattaaataaatgatgtatatggtttataataaagactacatacatcatttattcaatgaa 46462481  T
Q  311 tctaaaaagt 320  Q
     |||||||||    
T  46462482 cctaaaaagt 46462491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 48860556 - 48860585
Alignment:
Q  235 tttactttttaaattcattcaataaatgat 264  Q
    ||||||||||||||||||||||||||||||    
T  48860556 tttactttttaaattcattcaataaatgat 48860585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 134634 - 134586
Alignment:
Q  211 tccgatcttaattataagataatatttactttttaaattcattcaataa 259  Q
    ||||||||||||||||||| ||  ||||||||||| |||||||| ||||    
T  134634 tccgatcttaattataagaaaaactttactttttatattcattcgataa 134586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 42013172 - 42013236
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatt 299  Q
    ||||||||||||||||||||||| ||||||  || | ||||||||||  ||| | ||||||||||    
T  42013172 tttactttttaaattcattcaattaatgatgtatgtggtctatattataaaccacatacatcatt 42013236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 241 - 159
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    |||||||| ||||||||||||||||||  || | ||||||| || |||| | |||||| |||||  |||||||||||||||||    
T  241 actttttagattcattcaataaatgatgtatgtggtctataatatgaaccacatacataatttattaaatgaatctaaaaagt 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 5414 - 5501
Alignment:
Q  235 tttactttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagtaa 322  Q
    |||||||||||| |||||||||| ||||||  || | ||||||||||  ||| | |||||||||| |  |||||||||||||| ||||    
T  5414 tttactttttaagttcattcaattaatgatgtatgtggtctatattataaaccacatacatcattaattaaatgaatctaaaatgtaa 5501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 19822 - 19904
Alignment:
Q  238 actttttaaattcattcaataaatgatacatttagtctatattaagaactaaatacatcatttaccaaatgaatctaaaaagt 320  Q
    |||||||| ||||||| ||||||||||  || | ||||||| || |||| | |||||| |||||  |||||||||||||||||    
T  19822 actttttagattcattaaataaatgatgtatgtggtctataatatgaaccacatacataatttattaaatgaatctaaaaagt 19904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University