View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_high_23 (Length: 406)

Name: NF21440_high_23
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_high_23
NF21440_high_23
[»] chr3 (32 HSPs)
chr3 (1-406)||(6915058-6915463)
chr3 (1-396)||(6243274-6243669)
chr3 (1-395)||(6880473-6880867)
chr3 (1-396)||(6593030-6593425)
chr3 (1-384)||(6263639-6264022)
chr3 (1-400)||(6723752-6724151)
chr3 (1-384)||(6898045-6898428)
chr3 (1-406)||(7747959-7748364)
chr3 (1-396)||(6140243-6140638)
chr3 (16-384)||(6257174-6257542)
chr3 (1-384)||(6166854-6167237)
chr3 (115-400)||(6850951-6851236)
chr3 (212-396)||(13272230-13272414)
chr3 (1-216)||(13275261-13275476)
chr3 (1-66)||(6236004-6236069)
chr3 (21-59)||(4390927-4390965)
chr3 (27-65)||(6450800-6450838)
chr3 (27-65)||(6730728-6730766)
chr3 (25-59)||(6945252-6945286)
chr3 (1-65)||(6481991-6482055)
chr3 (21-65)||(8587903-8587947)
chr3 (16-59)||(5261910-5261953)
chr3 (28-59)||(6556729-6556760)
chr3 (28-59)||(6733661-6733692)
chr3 (28-59)||(6782343-6782374)
chr3 (28-59)||(6841582-6841613)
chr3 (25-59)||(7585855-7585889)
chr3 (16-65)||(5296717-5296766)
chr3 (129-218)||(8570804-8570893)
chr3 (25-65)||(5266063-5266103)
chr3 (163-203)||(5296864-5296904)
chr3 (167-227)||(6942062-6942122)
[»] scaffold0425 (2 HSPs)
scaffold0425 (1-86)||(13521-13606)
scaffold0425 (28-59)||(9777-9808)
[»] scaffold2053 (2 HSPs)
scaffold2053 (163-227)||(102-166)
scaffold2053 (28-65)||(264-301)
[»] scaffold1643 (1 HSPs)
scaffold1643 (25-59)||(154-188)
[»] chr7 (1 HSPs)
chr7 (162-222)||(6575174-6575234)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 6915058 - 6915463
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6915058 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccgtcaagtttggacatctttctattcggaggctgc 6915157  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915158 ctaggttggaaggcaactgcctcccaaaaaatgattccagccatggacactcatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 6915257  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915258 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 6915357  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaaggtag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915358 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaaggtag 6915457  T
Q  401 ctggca 406  Q
    ||||||    
T  6915458 ctggca 6915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 6243274 - 6243669
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    |||||||||| ||  |||||||| ||||| ||||||||||||||||||||||||||| | ||||||  ||| || || ||||||||||||||||||||||    
T  6243274 tcatcactaagactgaattgtttcagagatttgagttggaacaaaccccactcctctattgaagccatcaaattagggcatctttctattcggaggctgc 6243373  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||||||  | |||||| ||||||||| ||||||||||||||| ||||||| ||||||    
T  6243374 ctaggttggaaggcaactgcctcccgaaaaatgattccagcaatggacaatcgtacaacacgagagaattaagattggtgaacaagtgtagtgcaaaagg 6243473  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
     || |||||||||||||||| |||||| |||||||  ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||    
T  6243474 caaggaggaagagtgccaacttgttatggttaaagtgcgaagagaattacagctacgcatatccaaagaggaccattctagattttgaccaaagaagtct 6243573  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaag 396  Q
    |||||||||||||||||||||| || || |||||||| ||||| |||||||| ||||  ||||| |||||||||||||||||||||  ||||||||    
T  6243574 tcaacttccaattcttcaagaaaggtactgttaaatagaattttctctagggcggattcaatgatctgagttccacaaaggatgacctttttcaag 6243669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 6880473 - 6880867
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    ||||||| |||||  |||||||| ||||||||||||||||||||||||||||||||||| ||||||  ||| || |||||| ||| |||| ||||||| |    
T  6880473 tcatcaccaacactgaattgtttcagagaattgagttggaacaaaccccactcctctctcgaagccatcaacttaggacatttttttatttggaggctac 6880572  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
     ||||||||||||||||||| ||||| ||||||| |||||||||||| |  | ||||||  |||||||| ||||||||||||||| || |||| ||||||    
T  6880573 ataggttggaaggcaactgcctcccagaaaatgactccagccatggatagtcgtacaacatgagagaattaagattggtgaacaagtgcagtggaaaagg 6880672  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
     || || ||||||||||||| ||||||||||| ||  ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6880673 caaggaagaagagtgccaacttgttatagttagagtgcgaagagaattgcagctgcacatgtccaaagaggaccattctagatttggaccaaagaagtct 6880772  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaa 395  Q
    ||||||||||| |||||||||| ||||||||| || ||||||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||    
T  6880773 tcaacttccaactcttcaagaaaggcacagttcaacaaaatttgctctagggttgattgaatgacctgagttccacaaaggatgattcttttcaa 6880867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 6593425 - 6593030
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    |||||||||||||  |||||||| ||||||| ||||||||||||||||||||||||||| ||||||   || || |||||||||||||||||||||||||    
T  6593425 tcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctcgaagccattaatttaggacatctttctattcggaggctgc 6593326  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
     ||||||||||||||||||| | ||  |||| ||  | |||||||||||  | |||||  ||||||||| ||||||||||| ||| ||||| | ||||||    
T  6593325 ataggttggaaggcaactgcctgcctgaaaacgaccctagccatggacaatcgtacaaaacgagagaattaagattggtgagcaagtgtagagcaaaagg 6593226  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
     || |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||     
T  6593225 caaggaggaagagtgccaacctgttatagttaaagtgcgaagagaattacagctacacatgtccaaagaggaccattctagatttgaatcaaagaagtcc 6593126  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaag 396  Q
    ||||||||||| |||||||||| | ||| |||||||| ||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  6593125 tcaacttccaactcttcaagaaagacactgttaaatagaattttctctagggaggatttaatgacctgagttccacaaaggatgacccttttcaag 6593030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 6263639 - 6264022
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    |||||||||| ||  |||||||| ||||| ||||||||||||||||||||||||||| | | ||||  ||| ||  | ||||||||||||||||||||||    
T  6263639 tcatcactaagactgaattgtttcagagatttgagttggaacaaaccccactcctctattgtagccatcaaattacggcatctttctattcggaggctgc 6263738  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
     ||||||||||||||||||| || ||||||| ||||||||||| |||||    |||||| ||||||||| ||||||||||||||| ||||||| ||||||    
T  6263739 ttaggttggaaggcaactgcctctcaaaaaacgattccagccacggacaattgtacaacacgagagaattaagattggtgaacaaatgtagtgcaaaagg 6263838  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
    ||| || ||||||||||||||||||||||||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  6263839 aaaggaagaagagtgccaacctgttatagttaaagtgcgaagggaattacagctacacatattcaaagaggaccattctagatttggaccaaagaagtct 6263938  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatg 384  Q
    |||||||||| ||||||||||| ||||| | ||| || ||||| |||||||| || |  |||||| ||||||||||||||||||    
T  6263939 tcaacttccagttcttcaagaaaggcactgctaactagaattttctctagggtggtttcaatgacatgagttccacaaaggatg 6264022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 6724151 - 6723752
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    |||||||||||||  |||||||| ||||||| ||||||||||||||||||||||||||| ||||||   || || |||||||||||||||||||||||||    
T  6724151 tcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctcgaagccattaatttaggacatctttctattcggaggctgc 6724052  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
     |||| ||||||| |||||| | || ||||| || ||||||  ||||||  | |||||  ||||||||| ||||||||||| ||| ||||| | ||||||    
T  6724051 ataggctggaaggtaactgcctgccgaaaaacgactccagcagtggacaatcgtacaaaacgagagaattaagattggtgagcaagtgtagagcaaaagg 6723952  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
     || |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||||||||||||  || |||||||||||    
T  6723951 caaggaggaagagtgccaacctgttatagttagagtgcgaagagaattacagctacacatatccaaagaggaccattctagattatgatcaaagaagtct 6723852  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaaggtag 400  Q
    ||||||||||| ||||| |||| ||||| |||||||| ||||| ||||||||||||||||||||   ||||||||| |||||||||  ||||||||||||    
T  6723851 tcaacttccaactcttctagaaaggcactgttaaatagaattttctctagggaggatcgaatgatgcgagttccaccaaggatgaccgttttcaaggtag 6723752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 6898045 - 6898428
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    |||||||| ||||  || ||||| ||||||||||||||||||||||||||||||||||| ||||||  ||| || |||||||||||||||||||||||||    
T  6898045 tcatcacttacactgaactgtttcagagaattgagttggaacaaaccccactcctctctcgaagccatcaatttaggacatctttctattcggaggctgc 6898144  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
     ||||||| ||||||||||| |||   |||| ||||||||||||||||   | |||||| | ||||||||||||||||||||||| || |||| ||| ||    
T  6898145 ataggttgcaaggcaactgcctccagcaaaacgattccagccatggactatcgtacaacaccagagaatgaagattggtgaacaagtgcagtgcaaatgg 6898244  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
     || |||||||||||||||||||||||||||| ||  | ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  6898245 caaggaggaagagtgccaacctgttatagttagagtgcaaagtgaattacagctacacatatccaaagaggaccattctagattttgaccaaagaagtct 6898344  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatg 384  Q
    |||||||| ||  ||||||||| ||||| | |||||| ||||| |||||||| ||||  |||||||||||||||||||||||||    
T  6898345 tcaacttctaacacttcaagaaaggcactgctaaatagaattttctctagggcggattcaatgacctgagttccacaaaggatg 6898428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 7747959 - 7748364
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||| || ||||||||||||| |||||||||||    
T  7747959 tcatcactaacacataattgttttagagatttgagttggaacaaaccccactcctctctcgaagccatcaatttaggacatctttctactcggaggctgc 7748058  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
     ||| ||||| |||| |||| ||||  ||||  |||| ||||||||||   ||||||||  |||| ||||||||||||||||||| || |||| ||||||    
T  7748059 atagattggagggcagctgcctcccggaaaacaattctagccatggactatcatacaacatgagaaaatgaagattggtgaacaagtgcagtgcaaaagg 7748158  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
     ||  ||||||||||||||||||||||||||| |   ||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  7748159 caaataggaagagtgccaacctgttatagttagactgcgaagagaattacagctacacatatccgaagaggaccattctaaatttggaccaaagaagtct 7748258  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaaggtag 400  Q
    ||||||||||| | ||||||||  || | |||||||||||||| |||||||| ||||  |||||||  ||  |||||||||||||| ||||||||| |||    
T  7748259 tcaacttccaacttttcaagaaaagcgctgttaaataaaattttctctagggtggattcaatgacccaagacccacaaaggatgacccttttcaagctag 7748358  T
Q  401 ctggca 406  Q
     |||||    
T  7748359 atggca 7748364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 6140243 - 6140638
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    |||||||||| ||  |||||||| ||||| ||||||| ||||||||||||||||||| | ||||||  ||| || || ||||||||||| ||||||||||    
T  6140243 tcatcactaagactgaattgtttcagagatttgagtttgaacaaaccccactcctctattgaagccatcaaattagggcatctttctatccggaggctgc 6140342  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||||  | |||||| ||||||||| ||||||| |||| || | ||||| ||||||    
T  6140343 ctaggttgcaaggcaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaattaagattgttgaataagtatagtgcaaaagg 6140442  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
     || || ||||||||||||||||||||||||||||  ||||| |||| |||||||||||| | ||||||||||||||| | |||| ||||||||||||||    
T  6140443 caaggaagaagagtgccaacctgttatagttaaagtgcgaagggaataacagctacacatatacaaagaggaccattccatattttgaccaaagaagtct 6140542  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaag 396  Q
    ||||||||||| |||||||||| |||||  |||| || || || |||||||| ||||  |||||| |||||||||||||||||| | |||||||||    
T  6140543 tcaacttccaactcttcaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagttccacaaaggatggcccttttcaag 6140638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 6257174 - 6257542
Alignment:
Q  16 aattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgcctaggttggaaggca 115  Q
    |||||||| ||||| ||||||||||||||||||||||||||| | ||||||  ||| || || ||||||||||| |||||||||||||||||| ||||||    
T  6257174 aattgtttcagagatttgagttggaacaaaccccactcctctattgaagccatcaaattagggcatctttctatccggaggctgcctaggttgcaaggca 6257273  T
Q  116 actgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaaggaaatgaggaagagtg 215  Q
    ||||| |||||||||| |||||||||||||||||  | |||||| ||||||||| ||||||||||||||| ||||||| |||||| || || ||||||||    
T  6257274 actgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaattaagattggtgaacaagtgtagtgcaaaaggcaaggaagaagagtg 6257373  T
Q  216 ccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtcttcaacttccaattct 315  Q
    ||||||||||||||||| ||  | ||| |||| |||||||||||  | ||||||||||||||| | |||| ||||||||||||||||||||||||| |||    
T  6257374 ccaacctgttatagttagagtgcaaagggaataacagctacacacatgcaaagaggaccattccatatttcgaccaaagaagtcttcaacttccaactct 6257473  T
Q  316 tcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatg 384  Q
    ||||||| |||||  |||| || || || |||||||| ||||  |||||| ||||| ||||||||||||    
T  6257474 tcaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagtgccacaaaggatg 6257542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 6166854 - 6167237
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    |||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||||| | ||||||  ||| || || ||||||||||| ||||||||||    
T  6166854 tcatcactaagacttaattgtttcagagatttgagtttgaacaaaccccactcctctattgaagccatcaaattagggcatctttctatccggaggctgc 6166953  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
    |||||||| ||||||||||| |||||||||| ||||||||| |||||||  | |||||| ||||||||| ||||||| |||| |  ||||||| ||||||    
T  6166954 ctaggttgcaaggcaactgcctcccaaaaaacgattccagcaatggacaatcgtacaacacgagagaattaagattgttgaatacgtgtagtgcaaaagg 6167053  T
Q  201 aaatgaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtct 300  Q
     || || ||||||||||||||||||||||||||||  ||||| |||| |||||||||||| | ||||||| ||||||| | |||| ||||||||||||||    
T  6167054 caaggaagaagagtgccaacctgttatagttaaagtgcgaagggaataacagctacacatatacaaagagaaccattccatatttcgaccaaagaagtct 6167153  T
Q  301 tcaacttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatg 384  Q
    ||||||||||| |||| ||||| |||||  |||| || || || |||||||| ||||  |||||| ||||||||||||||||||    
T  6167154 tcaacttccaactctttaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagttccacaaaggatg 6167237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 115 - 400
Target Start/End: Complemental strand, 6851236 - 6850951
Alignment:
Q  115 aactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaaggaaatgaggaagagt 214  Q
    |||||| |||||||||| |||||||||||||||||  | |||||  | ||||||| ||||||| ||||||||||| ||| |||||| || |||||||| |    
T  6851236 aactgcctcccaaaaaacgattccagccatggacaatcgtacaaaacaagagaatcaagattgttgaacaattgtggtgcaaaaggcaaggaggaagaat 6851137  T
Q  215 gccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtcttcaacttccaattc 314  Q
    ||||||||||| |||||| ||  ||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  6851136 gccaacctgttgtagttagagtgcgaagagaattacagctattgaaatccaaagaggaccattctagatttggaccaaagaagtcttcaactttcaactc 6851037  T
Q  315 ttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaaggtag 400  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  6851036 ttcaagaaaggcacagttaaataaaatttgctctagggaggatggaatgacctgagttccgcaaaggatgactcttttcaaggtag 6850951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 212 - 396
Target Start/End: Complemental strand, 13272414 - 13272230
Alignment:
Q  212 agtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtcttcaacttccaa 311  Q
    ||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  13272414 agtgccaacctgttatagttaaagtgcgaagggaattacaactacacatatccaaagaggaccattctagatttggaccaaagaagtcttcaacttccag 13272315  T
Q  312 ttcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaag 396  Q
    ||||||||||| || ||   ||| || ||||| |||||||| |  |  |||||| |||||||||||||||||| | |||||||||    
T  13272314 ttcttcaagaaagggactactaactagaattttctctagggtgatttcaatgacatgagttccacaaaggatggcccttttcaag 13272230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 13275476 - 13275261
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttctattcggaggctgc 100  Q
    |||||||||| ||  |||||||| ||||| ||||||| ||||||||||||||||||| | | ||||  ||| ||  | ||||||||||||||||||||||    
T  13275476 tcatcactaagactgaattgtttcagagatttgagtttgaacaaaccccactcctctattgtagccatcaaattacggcatctttctattcggaggctgc 13275377  T
Q  101 ctaggttggaaggcaactgcttcccaaaaaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaagg 200  Q
     ||||||||||||||||||| ||  |||||| ||||||||||| |||||    |||||| ||||||||| ||||||||||||||| ||||||| ||||||    
T  13275376 ttaggttggaaggcaactgcctctaaaaaaacgattccagccacggacaattgtacaacacgagagaattaagattggtgaacaaatgtagtgcaaaagg 13275277  T
Q  201 aaatgaggaagagtgc 216  Q
     || || |||||||||    
T  13275276 caaggaagaagagtgc 13275261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6236004 - 6236069
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagcc 66  Q
    |||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  6236004 tcatcactaacactcaattgttttaaagatttgagttggaacaaaccccactcctctctcgaagcc 6236069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 4390965 - 4390927
Alignment:
Q  21 ttttagagaattgagttggaacaaaccccactcctctct 59  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  4390965 ttttagagaattgagttggaacaaaccccactcccctct 4390927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 6450838 - 6450800
Alignment:
Q  27 agaattgagttggaacaaaccccactcctctctagaagc 65  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  6450838 agaattgagttggaacaaaccccactcctctctcgaagc 6450800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 6730766 - 6730728
Alignment:
Q  27 agaattgagttggaacaaaccccactcctctctagaagc 65  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  6730766 agaattgagttggaacaaaccccactcctctctcgaagc 6730728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 6945252 - 6945286
Alignment:
Q  25 agagaattgagttggaacaaaccccactcctctct 59  Q
    |||||||||||||||||||||||||||||||||||    
T  6945252 agagaattgagttggaacaaaccccactcctctct 6945286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6482055 - 6481991
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagc 65  Q
    ||||||||||| |  || | ||| ||||||||||||||||||||||||||||| ||||| |||||    
T  6482055 tcatcactaactctaaactctttcagagaattgagttggaacaaaccccactcttctcttgaagc 6481991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 8587903 - 8587947
Alignment:
Q  21 ttttagagaattgagttggaacaaaccccactcctctctagaagc 65  Q
    |||||||||||||||||||||||||||||| | |||||| |||||    
T  8587903 ttttagagaattgagttggaacaaaccccattgctctctcgaagc 8587947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 5261910 - 5261953
Alignment:
Q  16 aattgttttagagaattgagttggaacaaaccccactcctctct 59  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||    
T  5261910 aattctttcagagaattgagttcgaacaaaccccactcctctct 5261953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 6556760 - 6556729
Alignment:
Q  28 gaattgagttggaacaaaccccactcctctct 59  Q
    ||||||||||||||||||||||||||||||||    
T  6556760 gaattgagttggaacaaaccccactcctctct 6556729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 6733661 - 6733692
Alignment:
Q  28 gaattgagttggaacaaaccccactcctctct 59  Q
    ||||||||||||||||||||||||||||||||    
T  6733661 gaattgagttggaacaaaccccactcctctct 6733692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 6782374 - 6782343
Alignment:
Q  28 gaattgagttggaacaaaccccactcctctct 59  Q
    ||||||||||||||||||||||||||||||||    
T  6782374 gaattgagttggaacaaaccccactcctctct 6782343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 6841613 - 6841582
Alignment:
Q  28 gaattgagttggaacaaaccccactcctctct 59  Q
    ||||||||||||||||||||||||||||||||    
T  6841613 gaattgagttggaacaaaccccactcctctct 6841582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 7585855 - 7585889
Alignment:
Q  25 agagaattgagttggaacaaaccccactcctctct 59  Q
    |||||||||||||||||||||||||||| ||||||    
T  7585855 agagaattgagttggaacaaaccccactgctctct 7585889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 5296717 - 5296766
Alignment:
Q  16 aattgttttagagaattgagttggaacaaaccccactcctctctagaagc 65  Q
    |||| ||| |||||||||||||||||||| ||||||| |||||| |||||    
T  5296717 aattctttcagagaattgagttggaacaacccccacttctctctcgaagc 5296766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 8570893 - 8570804
Alignment:
Q  129 aaatgattccagccatggacacacatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaaggaaatgaggaagagtgcca 218  Q
    |||||||||||||  ||||||  |  ||||| | ||| ||||||||||||||||||| ||| | |||||||| || ||||| ||||||||    
T  8570893 aaatgattccagctgtggacaatcggacaactctagataatgaagattggtgaacaagtgtggggtaaaaggcaaggaggaggagtgcca 8570804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 5266063 - 5266103
Alignment:
Q  25 agagaattgagttggaacaaaccccactcctctctagaagc 65  Q
    |||||||| ||||||||||||||||||||| |||| |||||    
T  5266063 agagaatttagttggaacaaaccccactcccctctcgaagc 5266103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 5296864 - 5296904
Alignment:
Q  163 agagaatgaagattggtgaacaattgtagtgtaaaaggaaa 203  Q
    |||||||||||||| |||||||| ||||||| |||||||||    
T  5296864 agagaatgaagattagtgaacaagtgtagtgaaaaaggaaa 5296904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 6942062 - 6942122
Alignment:
Q  167 aatgaagattggtgaacaattgtagtgtaaaaggaaatgaggaagagtgccaacctgttat 227  Q
    ||||||| ||||||||||| ||||||| |||||| || ||||| |||||||| ||| ||||    
T  6942062 aatgaagtttggtgaacaagtgtagtgaaaaaggcaaggaggaggagtgccatccttttat 6942122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 13606 - 13521
Alignment:
Q  1 tcatcactaacacataattgttttagagaattgagttggaacaaaccccactcctctctagaagccggcaagtttggacatctttc 86  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||| ||||||  ||| || |||||||||||    
T  13606 tcatcactaacactgaattgtttcagagaattgagttggaacaaaccccactcctctcttgaagccatcaatttaggacatctttc 13521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 9808 - 9777
Alignment:
Q  28 gaattgagttggaacaaaccccactcctctct 59  Q
    ||||||||||||||||||||||||||||||||    
T  9808 gaattgagttggaacaaaccccactcctctct 9777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 166 - 102
Alignment:
Q  163 agagaatgaagattggtgaacaattgtagtgtaaaaggaaatgaggaagagtgccaacctgttat 227  Q
    ||||||||||| ||||||||||| ||||||| |||||| || ||||| |||||||| ||| ||||    
T  166 agagaatgaagtttggtgaacaagtgtagtgaaaaaggcaacgaggatgagtgccatccttttat 102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 301 - 264
Alignment:
Q  28 gaattgagttggaacaaaccccactcctctctagaagc 65  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  301 gaattgagttggaacaaaccccactcctttcttgaagc 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 154 - 188
Alignment:
Q  25 agagaattgagttggaacaaaccccactcctctct 59  Q
    |||||||||||||||||||||| ||||||||||||    
T  154 agagaattgagttggaacaaactccactcctctct 188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 6575234 - 6575174
Alignment:
Q  162 gagagaatgaagattggtgaacaattgtagtgtaaaaggaaatgaggaagagtgccaacct 222  Q
    |||||||| ||||||||||||||| ||||||| |||||| ||  |||| || |||||||||    
T  6575234 gagagaatcaagattggtgaacaagtgtagtgaaaaaggcaacaaggaggattgccaacct 6575174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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