View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_25 (Length: 402)
Name: NF21440_high_25
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 34231718 - 34232082
Alignment:
| Q |
20 |
ttagatagtcacgaggactatagtgtactaggcctactcaaaattagcatgcttaaatttgacacggtgttagttcatgatcatatagaatcccgnnnnn |
119 |
Q |
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| T |
34231718 |
ttagatagtcacgaggactatagtgtactaggcctactcaaaattagcatgcttaaatttgacacggtgttagttcatgatcatatagaatcccgttttt |
34231817 |
T |
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| Q |
120 |
nngacacaatcatacagaatccataatgtctatatatggatatatatgaactagctataaaccactattcaaaatccaagatggtatgaataggt---aa |
216 |
Q |
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| T |
34231818 |
ttgacacaatcatacagaatccataatgtctatttatggatatatatgaactagctataaaccactattcataatccaagatggtatgaataggtggtaa |
34231917 |
T |
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| Q |
217 |
aaggcacgtccccattcattatgcttttgtccctaaaaatattcttcacagaatctatggtcattatcttatctcaacatcattgcattattgtaaagta |
316 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34231918 |
aagacacgtccccattcattattcttttgtccctaaaaatattcttcatagaatctatggtcattatcttatctcaacatcattgcattactgtaaagta |
34232017 |
T |
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| Q |
317 |
agactttcatatgatgagtgtacaccgaagatatatgcagatctcaaacttaggtgctattttat |
381 |
Q |
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| T |
34232018 |
agactttcatatgatgagtgtacaccgaagatatatgcagatctcaaacttaggtgctattttat |
34232082 |
T |
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