View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_3 (Length: 594)
Name: NF21440_high_3
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 1160262 - 1160712
Alignment:
| Q |
1 |
tcccattccacttccatggccacctgaacctccatgtcct------cctcctccctttcttatagtaacagatcgttcatgtttgtgtgcattttgactt |
94 |
Q |
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| T |
1160262 |
tcccattccacttccatggccacctgaacctccatgtcctcctcctcctcctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactt |
1160361 |
T |
|
| Q |
95 |
tcctcaaacccatctctgtggttcaaccttgtagatgcctcaatatttccatttccatctaagttccctataatttgaataaaacaagttatcaaaccaa |
194 |
Q |
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| T |
1160362 |
tccacaaacccatctttgtggttcaaccttgtagatgcctcaatatttccatttccatctaagttccctataatttgaataaaacaagttatcaaaccaa |
1160461 |
T |
|
| Q |
195 |
aagtgtgtgaaacaatattgaaatttgtgcttgtttgaaaaggtaaataaattgtaccattaaagccttgagcttgttcattgctttgcatgcttctagc |
294 |
Q |
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| T |
1160462 |
aagtgtgtgaaacaatattgaaatttgtgcttgtttgaaaaggtaaataaattgtaccattaaagccttgagcttgttcattgctttgaatgcttctagc |
1160561 |
T |
|
| Q |
295 |
ttcatctttgtttgatatggcttgagcaaatgaattgataagtaggaacaagactagaaacattgaaatcttcatattcatttgatatggcttcatttga |
394 |
Q |
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| T |
1160562 |
ttcatctttgtttgatatggcttgagcacatgaattgataagtaggaacaagactagaaacattgaaatcttcatattcatttgatatggcttcatttga |
1160661 |
T |
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| Q |
395 |
actgtagtcattggttggtagggtaaaggggttatataaagactttaattgaagg |
449 |
Q |
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| T |
1160662 |
actgtagtca----ttggtagggtaaaggggttatataaagactttaattgaagg |
1160712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 524 - 579
Target Start/End: Original strand, 1160824 - 1160879
Alignment:
| Q |
524 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaat |
579 |
Q |
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| T |
1160824 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaat |
1160879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 1137266 - 1137379
Alignment:
| Q |
41 |
cctcctccctttcttatagtaacagatcgttcatgtttgtgtgcattttgactttcctcaaacccatctctgtggttcaaccttgtagatgcctcaatat |
140 |
Q |
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| T |
1137266 |
cctcctccttttcttatggtaacagatagttcatgtttgtgttcatt---actttccatcatcgcaactctgtggttcaacctagtagagacttctatgt |
1137362 |
T |
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| Q |
141 |
ttccatttccatctaag |
157 |
Q |
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| T |
1137363 |
ttccatttccatctaag |
1137379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 516
Target Start/End: Original strand, 1160714 - 1160755
Alignment:
| Q |
475 |
tgaaagtaatttaatgtggtcccaaaaaatggtaatagaaag |
516 |
Q |
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| T |
1160714 |
tgaaagtaattcaatgtggtcccaaaaaatggtaatagaaag |
1160755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 1172323 - 1172387
Alignment:
| Q |
44 |
cctccctttcttatagtaacagatcgttcatgtttgtgtgcattttgactttcctcaaacccatc |
108 |
Q |
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| T |
1172323 |
cctccctttcttatagtaagagatagttcatgtttgtgatcattccgactttccacgaacccatc |
1172387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 1141865 - 1141912
Alignment:
| Q |
40 |
tcctcctccctttcttatagtaacagatcgttcatgtttgtgtgcatt |
87 |
Q |
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| T |
1141865 |
tcctcctccttttcttatggtaacagatagttcatgtttgtgttcatt |
1141912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 15612657 - 15612581
Alignment:
| Q |
45 |
ctccctttcttatagtaacagatcgttcatgtttgtgtgcattttgactttcctcaaacccatctctgtggttcaac |
121 |
Q |
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| T |
15612657 |
ctccctttcttatagtagcagatagatcatgattgcgttcattttaactttcctcaatcacatctttgttgttcaac |
15612581 |
T |
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