View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_high_31 (Length: 359)

Name: NF21440_high_31
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_high_31
NF21440_high_31
[»] chr5 (4 HSPs)
chr5 (254-334)||(20983881-20983961)
chr5 (254-334)||(14394383-14394462)
chr5 (262-334)||(20983526-20983598)
chr5 (286-334)||(25672669-25672717)
[»] chr4 (5 HSPs)
chr4 (259-334)||(43013169-43013244)
chr4 (259-334)||(54714495-54714570)
chr4 (259-315)||(23643835-23643891)
chr4 (262-334)||(43012737-43012809)
chr4 (262-320)||(54714948-54715006)
[»] chr6 (4 HSPs)
chr6 (251-340)||(8701296-8701385)
chr6 (253-334)||(605384-605464)
chr6 (259-323)||(12306950-12307014)
chr6 (259-315)||(5363750-5363806)
[»] chr8 (3 HSPs)
chr8 (259-330)||(187089-187160)
chr8 (297-334)||(25276812-25276849)
chr8 (285-334)||(308713-308762)
[»] chr2 (7 HSPs)
chr2 (252-334)||(9914616-9914697)
chr2 (259-334)||(9075008-9075083)
chr2 (262-331)||(30674073-30674142)
chr2 (259-323)||(39864748-39864811)
chr2 (262-323)||(29770749-29770810)
chr2 (262-323)||(39865376-39865437)
chr2 (206-255)||(42345803-42345851)
[»] chr7 (7 HSPs)
chr7 (253-331)||(32741447-32741525)
chr7 (261-334)||(15578162-15578235)
chr7 (282-334)||(38916047-38916099)
chr7 (288-334)||(28750587-28750633)
chr7 (259-330)||(27230881-27230952)
chr7 (262-323)||(31167032-31167093)
chr7 (259-323)||(31166403-31166466)
[»] chr1 (3 HSPs)
chr1 (259-331)||(25182423-25182495)
chr1 (285-323)||(40889195-40889233)
chr1 (262-320)||(40888767-40888825)
[»] chr3 (3 HSPs)
chr3 (255-334)||(785398-785476)
chr3 (284-334)||(53153501-53153551)
chr3 (259-305)||(18715145-18715191)


Alignment Details
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 20983961 - 20983881
Alignment:
Q  254 taggatgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  20983961 tagggtgctgctaaccagtgcccccggagcactggataagaaataataaataggcaataaataaatggatttcaattggtt 20983881  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 14394462 - 14394383
Alignment:
Q  254 taggatgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||| ||||||||||||||||| |||| |||||| |||||||||||||||||  |||||||||||||||| ||||||||||    
T  14394462 tagggtgctgctaaccagtgcc-ccggggcactgaataagaaataataaatagacaataaataaatgaatctcaattggtt 14394383  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 20983526 - 20983598
Alignment:
Q  262 tgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||||||| ||||| |||| ||||||||||||||| ||||||||  ||||||||||||| || ||| ||||||    
T  20983526 tgctaaccggtgcccccggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtt 20983598  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 25672717 - 25672669
Alignment:
Q  286 tggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  25672717 tggataagaaataataaatagacaataaataaatgaatctcaattggtt 25672669  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 43013244 - 43013169
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  43013244 tgctgctaaccagtgcccccggggcactggataagaaataataaataggcaataaataaatggatttcaattggtt 43013169  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 54714495 - 54714570
Alignment:
Q  259 tgctgctaaccagtgcctccg-gagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||||||||||||||| |||| | | |||| |||||||||||||||||  |||||||||||||||| ||||||||||    
T  54714495 tgctgctaaccagtgc-tccgagggtactgtataagaaataataaatagacaataaataaatgaatctcaattggtt 54714570  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 23643891 - 23643835
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaat 315  Q
    |||||||||||||||||   || ||| |||||||||||||||||||| |||||||||    
T  23643891 tgctgctaaccagtgccctgggggcaatggataagaaataataaataagcaataaat 23643835  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 43012737 - 43012809
Alignment:
Q  262 tgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||||||| ||||| |||| |||||||||||| || ||||||||  ||||||||||||| || ||| ||||||    
T  43012737 tgctaaccggtgcccccggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtt 43012809  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 54715006 - 54714948
Alignment:
Q  262 tgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatg 320  Q
    |||||||| |||||||||| ||| |||||||  ||||| ||||| ||||||||||||||    
T  54715006 tgctaaccggtgcctccggggcattggataaagaataaaaaataggcaataaataaatg 54714948  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 8701385 - 8701296
Alignment:
Q  251 aaataggatgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggttgactta 340  Q
    ||||||| ||||||||||| ||||| |||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||| || |||||    
T  8701385 aaatagggtgctgctaaccggtgcccccggggcactggttaagaaataataaataggcaataaataaatgaatctcaattgatttactta 8701296  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 605464 - 605384
Alignment:
Q  253 ataggatgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    ||||| |||||||||||||| || | || | |||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  605464 atagggtgctgctaaccagtaccccagg-gtactggataagaaataataaataggcaataaataaatgaatctcaattggtt 605384  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 12306950 - 12307014
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaat 323  Q
    |||| |||||| ||||| |||| ||||||||||||||||||||||||  ||||||||||||||||    
T  12306950 tgctactaaccggtgcccccggggcactggataagaaataataaatagacaataaataaatgaat 12307014  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 5363750 - 5363806
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaat 315  Q
    ||||||||||||||||||| || |||||| ||||| |||| ||||||  ||||||||    
T  5363750 tgctgctaaccagtgcctcgggggcactgtataaggaatattaaatagacaataaat 5363806  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 187160 - 187089
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaatt 330  Q
    ||||||||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  187160 tgctgctaaccagtgccccgggggcactggataagaaataataaataggcaataaataaatgaatctcaatt 187089  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 25276812 - 25276849
Alignment:
Q  297 taataaatatgcaataaataaatgaatatcaattggtt 334  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  25276812 taataaataggcaataaataaatgaatatcaattggtt 25276849  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 308762 - 308713
Alignment:
Q  285 ctggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||||||| |||||||||||| |||||| |||||| ||| ||||||||||    
T  308762 ctggataaaaaataataaataggcaatatataaataaatctcaattggtt 308713  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 9914697 - 9914616
Alignment:
Q  252 aataggatgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||  |||| ||||||||||| ||||||||||    
T  9914697 aatagggtgctgctaaccagtgcccccggagcactgaataaaaaataataaatagacaat-aataaatgaatctcaattggtt 9914616  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 9075083 - 9075008
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    ||||||||| |||||||  ||| ||||| |||||||||||||||||| |||||||||||||| || ||||||||||    
T  9075083 tgctgctaatcagtgccctcggggcactagataagaaataataaataggcaataaataaatggatttcaattggtt 9075008  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 30674073 - 30674142
Alignment:
Q  262 tgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattg 331  Q
    |||||||| ||||| ||||  |||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  30674073 tgctaaccggtgcccccgggacactggataaaaaataataaataggcaataaataaatgaatctcaattg 30674142  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 39864748 - 39864811
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaat 323  Q
    ||||||||||||||||| |||| ||||||||||||  | ||| |||||||| |||||||||||||    
T  39864748 tgctgctaaccagtgcccccggggcactggataag-gacaattaatatgcattaaataaatgaat 39864811  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 29770749 - 29770810
Alignment:
Q  262 tgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaat 323  Q
    |||||||||||| |||||| |||||||||||| || ||||||||   | |||||||||||||    
T  29770749 tgctaaccagtgtctccggggcactggataaggaacaataaatagtaattaaataaatgaat 29770810  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 39865437 - 39865376
Alignment:
Q  262 tgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaat 323  Q
    |||||||||||||| |||| |||||||||||| || ||||||||   | |||||||||||||    
T  39865437 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaat 39865376  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 42345803 - 42345851
Alignment:
Q  206 tagtacaaagatagttagttcctaggtgtttacttttacgattaaaaata 255  Q
    ||||||||||||||||||||||||| | ||||| ||||| ||||||||||    
T  42345803 tagtacaaagatagttagttcctagatatttac-tttacaattaaaaata 42345851  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 32741447 - 32741525
Alignment:
Q  253 ataggatgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattg 331  Q
    ||||| |||||||||||||||  |  || ||| | |||||||||||||||||||||||||||||||||||| |||||||    
T  32741447 atagggtgctgctaaccagtgtttttggggcattagataagaaataataaatatgcaataaataaatgaatctcaattg 32741525  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 15578235 - 15578162
Alignment:
Q  261 ctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||||||||| |||| |||   |||||||||| |||||||||||| | ||||||||||||||| ||||||||||    
T  15578235 ctgctaaccaatgcccccgagacactggataataaataataaataggtaataaataaatgaatctcaattggtt 15578162  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 38916047 - 38916099
Alignment:
Q  282 gcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    |||||||||||||||||||||||| |||||||||||||  || ||||||||||    
T  38916047 gcactggataagaaataataaataggcaataaataaatagatctcaattggtt 38916099  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 28750587 - 28750633
Alignment:
Q  288 gataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  28750587 gataaaaaataataaataggcaataaataaatgaatttcaattggtt 28750633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 27230952 - 27230881
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaatt 330  Q
    |||||||||||||||||   || ||||| ||||| |||||| ||||| ||||||| ||||||||| ||||||    
T  27230952 tgctgctaaccagtgccctgggggcactagataaaaaataaaaaataggcaataagtaaatgaatctcaatt 27230881  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 31167093 - 31167032
Alignment:
Q  262 tgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaat 323  Q
    |||||||||||||| |||| |||||||||||| || ||||||||   | |||||||||||||    
T  31167093 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaat 31167032  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 31166403 - 31166466
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaat 323  Q
    ||||||||||||||||| |||| ||||| ||||||  | ||| |||||||| |||||||||||||    
T  31166403 tgctgctaaccagtgcccccggggcactagataag-gacaattaatatgcattaaataaatgaat 31166466  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 25182495 - 25182423
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattg 331  Q
    ||||||||||||||||| |  |  || ||||||||||||||||||||  |||||||||||||||| |||||||    
T  25182495 tgctgctaaccagtgccccgaggacaatggataagaaataataaatagacaataaataaatgaatctcaattg 25182423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 40889233 - 40889195
Alignment:
Q  285 ctggataagaaataataaatatgcaataaataaatgaat 323  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  40889233 ctggataagaaataataaataggcaataaataaatgaat 40889195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 40888767 - 40888825
Alignment:
Q  262 tgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatg 320  Q
    |||||||| ||||||||||||||  |||||||||| ||| |||| |||||| |||||||    
T  40888767 tgctaaccggtgcctccggagcatcggataagaaacaattaataggcaatacataaatg 40888825  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 334
Target Start/End: Original strand, 785398 - 785476
Alignment:
Q  255 aggatgctgctaaccagtgcctccggagcactggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    ||||||||| |||||||||| ||   || ||||||||||||||||||||||  |||||||||||||||| | ||||||||    
T  785398 aggatgctgttaaccagtgc-tctaaagaactggataagaaataataaatagacaataaataaatgaatcttaattggtt 785476  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 53153501 - 53153551
Alignment:
Q  284 actggataagaaataataaatatgcaataaataaatgaatatcaattggtt 334  Q
    ||||||||| |||||||||||| |||||||||||||| || ||||||||||    
T  53153501 actggataataaataataaataggcaataaataaatggatttcaattggtt 53153551  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 18715145 - 18715191
Alignment:
Q  259 tgctgctaaccagtgcctccggagcactggataagaaataataaata 305  Q
    ||||||||||| |||||||||| ||||||| ||||||| ||||||||    
T  18715145 tgctgctaaccggtgcctccggggcactggttaagaaacaataaata 18715191  T

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