View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_36 (Length: 343)
Name: NF21440_high_36
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 3303970 - 3303646
Alignment:
| Q |
1 |
tcttttgcctcaggttatgagcttggtcggagttttttccagatgttaagaatccaaattaatgaaataaattggtactttaattcctcaaattacgtag |
100 |
Q |
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| T |
3303970 |
tcttttgcctcaggttatgagcttggtcggagttttttccagatgttaagaatccaaattaatgaaataaattggtactttaattcctcaaattacgtag |
3303871 |
T |
|
| Q |
101 |
tacctacaatgtgcgattggttttataatttttaagtcacatcaagataagaaactgtttagaacaaaagaagaatgattctgtatttgtgatggctagt |
200 |
Q |
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| T |
3303870 |
tacctacaatgtgcgattggttttataatttttaagtcacatcaagataagaaactgtttagaacaaaagaagaatgattctgtatttgtgatggctagt |
3303771 |
T |
|
| Q |
201 |
tggccaagaagaaacaaattagggaagcaaatgagtataatgtgaatgatatttcgttagacggtgattggtttgtcacttagtgtagaaagatccaaat |
300 |
Q |
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| T |
3303770 |
tggccaagaagaaacaaattagggaagcaaatgagtataatgtgaatgatatttcgttagacggtgattggtttgtcacttagtggagaaagatccaaat |
3303671 |
T |
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| Q |
301 |
acatacttcaactggatgattggat |
325 |
Q |
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| T |
3303670 |
acatacttcaattggatgattggat |
3303646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 294
Target Start/End: Complemental strand, 3292040 - 3291788
Alignment:
| Q |
41 |
agatgttaagaatccaaattaatgaaataaattggtactttaattcctcaaattacgtagtacctacaatgtgcgattggttttataatttt-taagtca |
139 |
Q |
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| T |
3292040 |
agatggtaagaaaccaaattaataaaataaattg-ta-ttcaattcctcaaattacttggtacctacaatgtctgaattgttgtataattttctatgtca |
3291943 |
T |
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| Q |
140 |
catcaagataagaaactgtttagaacaaaagaagaatgattctgtatttgtgatggctagttggccaagaagaaacaaattagggaagcaaatgagtata |
239 |
Q |
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| T |
3291942 |
caccaagaaaagaaactgtttaaaacaaaataagaatgatgttgtatttgtggtggctaattggccaaaaagaagcaagttgcaaaagcaaattagtata |
3291843 |
T |
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| Q |
240 |
atgtgaatgatatttcgttagacggtgattggtttgtcacttagtgtagaaagat |
294 |
Q |
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| T |
3291842 |
ttgtgaatgatatttcgttaggtgatgattagtctgtgacttagttgagaaagat |
3291788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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