View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_39 (Length: 334)
Name: NF21440_high_39
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 38126655 - 38126351
Alignment:
| Q |
3 |
atcagtgtcaaatgcattccaactaataaggcatgcatatatttaataaatatttctcaaaaatatggagaaataaaacttaaggaatgtgcattaaaat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
38126655 |
atcagtgtcaaatgcattccaactaataaggcatgcatatatttaataaatatttctcaaaaatatggagaaataaga--------------attaaaat |
38126570 |
T |
|
| Q |
103 |
aagtgaactaatcctacatgttataggtttgatctgaggaccatgtatacagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgttt |
202 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38126569 |
aagtgaactaatcctacatgttataggtttgatctaaggaccatgtatacagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgttt |
38126470 |
T |
|
| Q |
203 |
gtctaaacttctacttctagtttatatgaagatattgtcatatatgtcagttttcctgatctatatctacatagagacctatgaagtaatccctagtaat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38126469 |
gtctaaacttctacttctagtttatatgaagatattgtcatatatgtcagttttcctgatctatatctacatagagacctatgaagtaatccctagtaat |
38126370 |
T |
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| Q |
303 |
aaatcctgcagttgatatt |
321 |
Q |
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||||||||||||||||||| |
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| T |
38126369 |
aaatcctgcagttgatatt |
38126351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 39708616 - 39708558
Alignment:
| Q |
45 |
ttaataaatatttctcaaaaa-tatggagaaataaaacttaaggaatgtgcattaaaat |
102 |
Q |
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|||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
39708616 |
ttaataaacatttctgaaaaaatatggagaaataagacttaaggaatgtgcattaaaat |
39708558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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