View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_45 (Length: 318)
Name: NF21440_high_45
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 40442482 - 40442201
Alignment:
| Q |
19 |
gaacaacagatactaacagaaaagcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctcatttgaaaaattagcaa |
118 |
Q |
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| T |
40442482 |
gaacaacagatactaacagaaaagcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctcatttgaaaaattagcaa |
40442383 |
T |
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| Q |
119 |
gtctatatagatattgttttcatggcttaggataagaggaacaatttcaatgaacatgtatggacatagaaaagtaatcagtgcctcaatctcaaggatg |
218 |
Q |
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| T |
40442382 |
gtctatatagatattgttttcatggcttaggataagaggaacaatttcaatgaacatgtatggacatagaaaagtaatcagtgcctcaatcacaaggatg |
40442283 |
T |
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| Q |
219 |
tccaaaatattgatcaagttggtaaaagattgtgtggttgtgttgtacctacagattccagggataagagttaagacaagtg |
300 |
Q |
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| T |
40442282 |
tccaaaatattgatcaagttggtaaaagattgtgtggttgtgttgtgcctacagattccagggataagagttaagacaagtg |
40442201 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 13063631 - 13063691
Alignment:
| Q |
42 |
gcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctca |
102 |
Q |
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| T |
13063631 |
gcaataccctcaagcattggcatttggtgtttcaggaattagaagccaagctatcatctca |
13063691 |
T |
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