View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_46 (Length: 312)
Name: NF21440_high_46
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 10529884 - 10529638
Alignment:
| Q |
19 |
atgataccttaccacataaattaaactgagatgaaaatgacagatatagaaggaaaatggaagaaacttgatgattcacttattcaaatcacctcataat |
118 |
Q |
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| T |
10529884 |
atgataccttaccacataaattaaactaagatgaaaatgacagatatagaaggaaaatggaagaaacttgacgattcacttattcaaatcacctcataat |
10529785 |
T |
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| Q |
119 |
gaagaactgtacaactacgaaccaacttctgagtaactctaactttcttctaactaatctattgcttactaaaactaattataattttgctaacaaactc |
218 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10529784 |
gaagaacggtacaactacgaaccaacttctgactaactctaactttcttctaactaatctattacttactaaaactaattataattttgctaacaaactc |
10529685 |
T |
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| Q |
219 |
aaagtagttagttaatttcaacgatctcaataacttgcagttgaagt |
265 |
Q |
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| T |
10529684 |
aaagtagttagttaatttcaacgatctcaataacttgcagttgaagt |
10529638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 10528934 - 10528894
Alignment:
| Q |
262 |
aagtaacaactacaagtgtagttttgcactgcaatcctatg |
302 |
Q |
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||||||||||||||||| |||||||||| |||||||||||| |
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| T |
10528934 |
aagtaacaactacaagtatagttttgcagtgcaatcctatg |
10528894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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