View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_47 (Length: 306)
Name: NF21440_high_47
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 38126737 - 38127016
Alignment:
| Q |
15 |
ttatataactggagtgtcatatttggtggagtgatttcttgtttatagtacaagcattggtctaatctttgcgtatcttgtgtttagactatattttact |
114 |
Q |
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| T |
38126737 |
ttatataactggagtgtcatatttggtggagtgatttcttgtgtatagtacaagcattggtctaatctttgcgtatcttgcgtctagactatattttact |
38126836 |
T |
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| Q |
115 |
tctagatttttcattttaaaaagaagtttgtgctatatatcaaacttaaaccttctaccaggaacacctaaatgagagatgataatgaatctcttcaaga |
214 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38126837 |
tctaga-ttttcattttaaaaaggagtttgtgctatatatcaaacttaaaccttctaccaggaacacctaaatgagagatgataatgaatctcttc-tgg |
38126934 |
T |
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| Q |
215 |
cttaactagaggttttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagagttttgtcattcat |
296 |
Q |
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| T |
38126935 |
cttaactagaggttttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagaattttgtcattcat |
38127016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 38127110 - 38127215
Alignment:
| Q |
190 |
gagatgataatgaatctcttcaagacttaactagaggttttgagttcgaatcaaactctcggaatgtaa----caatgttaaatcttttgaggaagagtt |
285 |
Q |
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| T |
38127110 |
gagatgataatgaatctctttcag-cttagctagaggttttgagttcgaatccagctctcggaacgcaataattaatgttaaatctcttgatgaagaatt |
38127208 |
T |
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| Q |
286 |
ttgtcat |
292 |
Q |
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||||||| |
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| T |
38127209 |
ttgtcat |
38127215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 15064322 - 15064366
Alignment:
| Q |
252 |
aatgtaacaatgttaaatcttttgaggaagagttttgtcattcat |
296 |
Q |
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| T |
15064322 |
aatgtatcaatgttaaatcttttgaagaagagttttatcattcat |
15064366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 8168951 - 8168877
Alignment:
| Q |
216 |
ttaactagaggttttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagagttttgtca |
291 |
Q |
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| T |
8168951 |
ttaactagaggttt-gagttcgaatctaattatgagaatgcagcaatgttaaatcttttgaaggagagttttgtca |
8168877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 37438311 - 37438270
Alignment:
| Q |
230 |
tgagttcgaatcaaactctcggaatgtaacaatgttaaatct |
271 |
Q |
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| T |
37438311 |
tgagtttgaatccaactctgggaatgtaacaatgttaaatct |
37438270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 7163920 - 7163952
Alignment:
| Q |
259 |
caatgttaaatcttttgaggaagagttttgtca |
291 |
Q |
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| T |
7163920 |
caatgttaaatctattgaggaagagttttgtca |
7163952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 15052033 - 15052066
Alignment:
| Q |
264 |
ttaaatcttttgaggaagagttttgtcattcatc |
297 |
Q |
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| T |
15052033 |
ttaaatcttttgagaaagagttttgtcattcatc |
15052066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 43346398 - 43346361
Alignment:
| Q |
251 |
gaatgtaacaatgttaaatcttttgaggaagagttttg |
288 |
Q |
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||||| ||||||||||||||| |||||||||||||||| |
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| T |
43346398 |
gaatgcaacaatgttaaatctcttgaggaagagttttg |
43346361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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