View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_high_5 (Length: 517)

Name: NF21440_high_5
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_high_5
NF21440_high_5
[»] chr4 (34 HSPs)
chr4 (11-500)||(1600498-1600987)
chr4 (328-454)||(55908576-55908702)
chr4 (107-188)||(55908337-55908418)
chr4 (400-498)||(53761692-53761790)
chr4 (388-455)||(3438474-3438541)
chr4 (337-498)||(12121314-12121475)
chr4 (388-453)||(1533898-1533963)
chr4 (363-452)||(7225766-7225855)
chr4 (332-452)||(547040-547160)
chr4 (351-456)||(1548297-1548399)
chr4 (351-454)||(8186962-8187065)
chr4 (388-453)||(1495830-1495895)
chr4 (351-498)||(8183901-8184048)
chr4 (403-499)||(570431-570524)
chr4 (390-452)||(1537677-1537739)
chr4 (31-189)||(3438186-3438343)
chr4 (390-447)||(558630-558687)
chr4 (388-452)||(6006455-6006519)
chr4 (391-454)||(1524397-1524460)
chr4 (389-454)||(1552676-1552738)
chr4 (386-452)||(1489267-1489333)
chr4 (393-454)||(659834-659895)
chr4 (330-452)||(532313-532432)
chr4 (388-452)||(1517407-1517471)
chr4 (390-474)||(12120052-12120136)
chr4 (399-454)||(641040-641095)
chr4 (399-450)||(1519062-1519113)
chr4 (398-452)||(21834296-21834350)
chr4 (391-452)||(553606-553667)
chr4 (366-475)||(644934-645043)
chr4 (386-431)||(1505017-1505062)
chr4 (107-188)||(1527812-1527893)
chr4 (386-454)||(371045-371113)
chr4 (135-187)||(641321-641373)
[»] chr6 (23 HSPs)
chr6 (351-492)||(7119244-7119382)
chr6 (351-492)||(7131722-7131860)
chr6 (118-188)||(7993805-7993875)
chr6 (335-455)||(9411476-9411596)
chr6 (399-498)||(6402941-6403040)
chr6 (399-498)||(6432242-6432341)
chr6 (399-452)||(6594525-6594578)
chr6 (328-498)||(6394945-6395112)
chr6 (328-454)||(6416091-6416214)
chr6 (400-451)||(8913904-8913955)
chr6 (112-218)||(6588949-6589055)
chr6 (328-455)||(6426635-6426759)
chr6 (399-451)||(6585156-6585208)
chr6 (328-454)||(6589174-6589297)
chr6 (399-498)||(7994101-7994200)
chr6 (391-498)||(11936186-11936293)
chr6 (391-498)||(11948166-11948273)
chr6 (116-182)||(6596567-6596633)
chr6 (399-453)||(14820819-14820873)
chr6 (399-450)||(6596847-6596898)
chr6 (29-149)||(8913599-8913723)
chr6 (334-454)||(6410131-6410248)
chr6 (116-188)||(6432557-6432629)
[»] chr2 (4 HSPs)
chr2 (328-454)||(1037512-1037638)
chr2 (333-448)||(32785628-32785740)
chr2 (107-188)||(1037273-1037354)
chr2 (389-453)||(45244994-45245058)
[»] chr8 (8 HSPs)
chr8 (340-498)||(18315133-18315291)
chr8 (332-448)||(32151432-32151545)
chr8 (351-453)||(17636268-17636370)
chr8 (348-451)||(34936031-34936134)
chr8 (388-478)||(44736578-44736668)
chr8 (391-475)||(28246206-28246290)
chr8 (107-217)||(17627668-17627778)
chr8 (332-373)||(17627911-17627952)
[»] chr3 (5 HSPs)
chr3 (328-454)||(13470583-13470706)
chr3 (399-495)||(51113700-51113796)
chr3 (330-454)||(514578-514702)
chr3 (328-498)||(51764291-51764458)
chr3 (366-448)||(1657378-1657460)
[»] chr7 (5 HSPs)
chr7 (330-454)||(10614718-10614839)
chr7 (393-454)||(7977703-7977764)
chr7 (328-465)||(10169981-10170115)
chr7 (328-465)||(10177506-10177640)
chr7 (400-452)||(15092071-15092123)
[»] chr1 (6 HSPs)
chr1 (328-498)||(19468350-19468517)
chr1 (328-449)||(9581198-9581319)
chr1 (328-449)||(9586766-9586887)
chr1 (339-452)||(7554546-7554659)
chr1 (28-156)||(19468038-19468166)
chr1 (79-187)||(33160914-33161022)
[»] scaffold0295 (1 HSPs)
scaffold0295 (350-454)||(494-598)
[»] chr5 (5 HSPs)
chr5 (352-498)||(32267556-32267699)
chr5 (332-452)||(41901390-41901510)
chr5 (328-498)||(41889402-41889572)
chr5 (403-474)||(28525116-28525187)
chr5 (107-218)||(28532084-28532195)
[»] scaffold0807 (1 HSPs)
scaffold0807 (404-454)||(1388-1438)
[»] scaffold0262 (1 HSPs)
scaffold0262 (107-188)||(326-407)
[»] scaffold0014 (2 HSPs)
scaffold0014 (397-462)||(88933-88998)
scaffold0014 (159-218)||(89137-89196)
[»] scaffold0105 (1 HSPs)
scaffold0105 (393-497)||(523-627)


Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 1600987 - 1600498
Alignment:
Q  11 ttatactggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttg 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1600987 ttatattggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccttgttg 1600888  T
Q  111 acttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttactta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600887 acttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttactta 1600788  T
Q  211 atgagatcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgtgttgtaaaccctcaaatcaagtgtctacgtttggctaacaattatgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600787 atgagatcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgtgttgtaaaccctcaaatcaagtgtctacgtttggctaacaattatgt 1600688  T
Q  311 gttacaagatacaaaggtcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgt 410  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600687 gttacaagatacaaagatcataatgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgt 1600588  T
Q  411 caagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttctt 500  Q
    |||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1600587 caagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttctt 1600498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 55908576 - 55908702
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||| |||||||||||| ||| |||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||| ||||||||||    
T  55908576 tcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatg 55908675  T
Q  428 ttctaagattagacatttgaacttagc 454  Q
    || |||| ||||||||||||| |||||    
T  55908676 ttgtaaggttagacatttgaatttagc 55908702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 55908337 - 55908418
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  55908337 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactc 55908418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 498
Target Start/End: Original strand, 53761692 - 53761790
Alignment:
Q  400 aaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||  ||||||||| | |||||||    ||||||||||||| |||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttc 53761790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 3438474 - 3438541
Alignment:
Q  388 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagct 455  Q
    |||||||||| |||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  3438474 acatatctgacgaaggtgttattcaagttttaaggagatgttgtaagattagacatttgaacttagct 3438541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 498
Target Start/End: Original strand, 12121314 - 12121475
Alignment:
Q  337 ttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagat 436  Q
    ||||||||  ||| |||||||| ||| |||||||||||||   ||||  |||||||||||||||||||||||  ||||| ||||||| ||||||  ||||    
T  12121314 ttgcttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattttccaagtcttaaggacatgttccgagat 12121413  T
Q  437 tagacatttgaacttagctcag-tgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    ||  |||||||||||| | ||| |||| |  || |||||||||  ||||||||||||||||||    
T  12121414 tacgcatttgaacttaac-cagttgtttaggaaggaagctgcgccgaatgaactttgaagttc 12121475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 1533898 - 1533963
Alignment:
Q  388 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttag 453  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||||| | ||||||||||||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaacttag 1533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 452
Target Start/End: Original strand, 7225766 - 7225855
Alignment:
Q  363 ctgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    |||||||||||||||  || |  |||||| | |||||||||  |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  7225766 ctgcttgatttgagctcttcccataacatgtatgaagaaggggtttgtcaagttttacggagatgttgtaagattagacatttgaactta 7225855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 547160 - 547040
Alignment:
Q  332 aatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 431  Q
    ||||||| ||||||  || |||||||| |||||||||||||| ||   |||   |||||||||||||||  |||||||| | |||||||||||||||| |    
T  547160 aatgtttccttccatgttccccaatttgcaactgcttgatttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgt 547061  T
Q  432 aagattagacatttgaactta 452  Q
    ||||| || ||||||||||||    
T  547060 aagataaggcatttgaactta 547040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 351 - 456
Target Start/End: Original strand, 1548297 - 1548399
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 450  Q
    |||||||| ||||||||||||||||  | ||||| |  |||||| || |||||||||||| ||||||||   ||||||| |||||||||||| |||||||    
T  1548297 cccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagattagacagttgaact 1548393  T
Q  451 tagctc 456  Q
    ||||||    
T  1548394 tagctc 1548399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 351 - 454
Target Start/End: Original strand, 8186962 - 8187065
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 450  Q
    |||||||| ||  |||||||||||||   ||||  | ||||||||||||||||||||||||||||||| | |||||||| | |||||||  |||||||||    
T  8186962 cccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaact 8187061  T
Q  451 tagc 454  Q
    ||||    
T  8187062 tagc 8187065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 1495830 - 1495895
Alignment:
Q  388 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttag 453  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||||| | ||||||| ||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgttgtaagatgacacatttggacttag 1495895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 498
Target Start/End: Original strand, 8183901 - 8184048
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 450  Q
    |||||||| || | ||||||||||||   |||| || |||| |||||| ||||||||  |||| |||||||||| |||| | |||||||| |||||||||    
T  8183901 cccaatttgcagcggcttgatttgagtcattgctttgacatttctgaaaaaggtattactcaaattttaaggagttgttgtgagattagagatttgaact 8184000  T
Q  451 tagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    ||||| |   | ||| ||||| |||| |  ||||||||||||||||||    
T  8184001 tagcttacattccaaaaatgaggctgagcagaatgaactttgaagttc 8184048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 403 - 499
Target Start/End: Complemental strand, 570524 - 570431
Alignment:
Q  403 gtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttct 499  Q
    |||||||||||||||||||   ||||| |||  |||| ||||||||||||||||| || |||| | |||| ||||| ||| ||||||||||||||||    
T  570524 gtatttgtcaagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttct 570431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 1537677 - 1537739
Alignment:
Q  390 atatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    ||||||||||||||||||| |||||||||||||| ||||||  || |||| ||||||||||||    
T  1537677 atatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaggcatttgaactta 1537739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 3438186 - 3438343
Alignment:
Q  31 tgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcgtttcttggtgattt 130  Q
    ||||||||||||||||| |||| |||||||||| |||| ||| | |  | ||| | || ||||||||||||| |  |||| |   ||||| |||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatcttcaaaaa-cttactttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgattt 3438284  T
Q  131 ggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactca 189  Q
    ||| ||||||||||||||||| |||   ||||||||| ||| |||||| ||| ||||||    
T  3438285 ggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactca 3438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 558687 - 558630
Alignment:
Q  390 atatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttga 447  Q
    ||||| ||| ||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  558687 atatcagaaaaaggtatttgtcatgttttaaggacatgttctaacattagacatttga 558630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 6006519 - 6006455
Alignment:
Q  388 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    |||||||||| |||||| ||  |||||||||||||| ||||  ||||||||||||||||||||||    
T  6006519 acatatctgatgaaggtgttgctcaagttttaaggaaatgtagtaagattagacatttgaactta 6006455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 454
Target Start/End: Original strand, 1524397 - 1524460
Alignment:
Q  391 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 454  Q
    |||||||||||||||||  ||| |||||||||||||||| |||  |||| ||||||||||||||    
T  1524397 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagc 1524460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 454
Target Start/End: Original strand, 1552676 - 1552738
Alignment:
Q  389 catatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 454  Q
    |||||| || |||||||||||| ||||||||||   ||||| ||||||||||||||||||||||||    
T  1552676 catatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacatttgaacttagc 1552738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 1489267 - 1489333
Alignment:
Q  386 taacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    |||||||||||||||||||||||  || ||||||| || ||||||| | ||||| ||||||||||||    
T  1489267 taacatatctgaagaaggtattttccatgttttaaagacatgttctgatattaggcatttgaactta 1489333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 454
Target Start/End: Complemental strand, 659895 - 659834
Alignment:
Q  393 tctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 454  Q
    |||||||||| |||| ||||| ||||||||||||||| ||| |||||| |||| ||||||||    
T  659895 tctgaagaagatattggtcaaattttaaggagatgttgtaacattagatatttaaacttagc 659834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 452
Target Start/End: Complemental strand, 532432 - 532313
Alignment:
Q  330 ataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    ||||||||||| |||| ||| |||||||| ||  |||| || ||||||  |||   |||||||||| |||||||||||| ||||||||| | ||||||      
T  532432 ataatgtttgcatccattttccccaatttacatatgctggacttgagctattgttataacatatctaaagaaggtatttatcaagttttgaagagatg-- 532335  T
Q  430 ctaagattagacatttgaactta 452  Q
     |||||| ||| |||||||||||    
T  532334 -taagatcagagatttgaactta 532313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 1517407 - 1517471
Alignment:
Q  388 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    |||||||||||||||||||   ||| |||||||||||||||| |||||| | ||||||| |||||    
T  1517407 acatatctgaagaaggtatcgatcatgttttaaggagatgttgtaagatgacacatttggactta 1517471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 12120052 - 12120136
Alignment:
Q  390 atatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagc 474  Q
    |||||| | ||||||||| |||||||||||| || | ||  ||||||||||||||||||||| || || ||||||| | ||||||    
T  12120052 atatctaacgaaggtattggtcaagttttaaagaaaagtagtaagattagacatttgaactttgcccactgttcaagactgaagc 12120136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 641095 - 641040
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 454  Q
    ||||| |||| |||||||||||||| ||||| |||  |||||||||||||||||||    
T  641095 gaaggaatttttcaagttttaaggatatgttgtaatgttagacatttgaacttagc 641040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 1519062 - 1519113
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 450  Q
    ||||||||||||||||||||||| |||||||  | |||||| ||||||||||    
T  1519062 gaaggtatttgtcaagttttaagaagatgttgaaggattaggcatttgaact 1519113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 21834296 - 21834350
Alignment:
Q  398 agaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    ||||||||||||  |||||||||||| ||||| ||||||||  ||||||||||||    
T  21834296 agaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaactta 21834350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 553667 - 553606
Alignment:
Q  391 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    |||||||||||| | ||  ||| |||||||||| ||||| ||| ||||||||||||||||||    
T  553667 tatctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttgaactta 553606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 475
Target Start/End: Complemental strand, 645043 - 644934
Alignment:
Q  366 cttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaa 465  Q
    ||||||||||||  |||||   || ||||||||||||||||   ||| ||||||| || ||||| ||| |||||||||||||| ||| |||  |||||||    
T  645043 cttgatttgagccattgcaaagacgtatctgaagaaggtatggttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaa 644944  T
Q  466 taatgaagct 475  Q
     | |||||||    
T  644943 gactgaagct 644934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 1505017 - 1505062
Alignment:
Q  386 taacatatctgaagaaggtatttgtcaagttttaaggagatgttct 431  Q
    |||||||||||||||||||||||  || |||||||||| |||||||    
T  1505017 taacatatctgaagaaggtattttccatgttttaaggacatgttct 1505062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 1527812 - 1527893
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||||||||||| |||||||| | ||||||||| ||||| |||||  ||  |||||| | | ||||||||||||||||    
T  1527812 gttgtcttcgtttcttagtgatttgttgtctataaacattagtaaatgtgatagcctcacacatttagccttgtttgcactc 1527893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 371113 - 371045
Alignment:
Q  386 taacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 454  Q
    ||||||||||||  |  |||| |||| ||||||||  ||||| ||||||||||| ||||||||||||||    
T  371113 taacatatctgacaacagtatctgtcgagttttaaatagatggtctaagattaggcatttgaacttagc 371045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 641373 - 641321
Alignment:
Q  135 tctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcact 187  Q
    ||||||||||||||| | ||| ||| ||||||| ||||| |||||||||||||    
T  641373 tctataaaccttagtcattgtggtaagctcacaaaatcaaccttgtttgcact 641321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 7119382 - 7119244
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 450  Q
    |||||||| ||||| ||||||||||  | ||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||    
T  7119382 cccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaact 7119286  T
Q  451 tagctcagtgttcaataatgaagctgcgaggaatgaactttg 492  Q
    |||| || ||||||| | ||||||| |  |||||||||||||    
T  7119285 tagcccactgttcaagagtgaagctacttggaatgaactttg 7119244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 7131860 - 7131722
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 450  Q
    |||||||| ||||| ||||||||||  | ||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||    
T  7131860 cccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaact 7131764  T
Q  451 tagctcagtgttcaataatgaagctgcgaggaatgaactttg 492  Q
    |||| || ||||||| | ||||||| |  |||||||||||||    
T  7131763 tagcccactgttcaagagtgaagctacttggaatgaactttg 7131722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 7993805 - 7993875
Alignment:
Q  118 ttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  7993805 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactc 7993875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 335 - 455
Target Start/End: Complemental strand, 9411596 - 9411476
Alignment:
Q  335 gtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaag 434  Q
    ||||||||||| ||| |||||||| || ||||||||||||||| | ||   |||||||||| | ||||||||||  || |||||||||||||||  |||     
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaac 9411497  T
Q  435 attagacatttgaacttagct 455  Q
    ||||||||||||||| |||||    
T  9411496 attagacatttgaacctagct 9411476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 498
Target Start/End: Complemental strand, 6403040 - 6402941
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||  |||||||| | ||||||| |  ||||| ||||||| |||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttc 6402941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 498
Target Start/End: Complemental strand, 6432341 - 6432242
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    ||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||  | |||  || | ||||||| |  |||||||||||||||||||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttc 6432242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 6594525 - 6594578
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  6594525 gaaggtatttgtcaagttttaaggagatgttataagattacacatttgtactta 6594578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 328 - 498
Target Start/End: Complemental strand, 6395112 - 6394945
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||||||||| |||||| ||| |||||||| || || ||||||||||   |||||    | ||||||||||   |||||||||||||||||| || |||    
T  6395112 tcataatgtttacttccattttccccaatttacagctacttgatttgacacgttgctcacaaatatctgaag---gtatttgtcaagttttaaagaaatg 6395016  T
Q  428 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    || |||| ||| ||||||||||||||||   ||||||| | |||| || |  ||||||||||||| |||||    
T  6395015 ttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttc 6394945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 328 - 454
Target Start/End: Complemental strand, 6416214 - 6416091
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||||||||| ||||||| || |||||||| || |||||||||||||   |||| | |  | |||||||||   |||||||||||||||||| || |||    
T  6416214 tcataatgttttcttccaacttccccaatttgcagctgcttgatttgaatcgttgtaatctcttatctgaag---gtatttgtcaagttttaaagatatg 6416118  T
Q  428 ttctaagattagacatttgaacttagc 454  Q
    || ||||||| | ||||||||||||||    
T  6416117 ttgtaagattgggcatttgaacttagc 6416091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 8913904 - 8913955
Alignment:
Q  400 aaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactt 451  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  8913904 aaggtatttgtcaagttttaagaagatgttgtaagattaaacatttgaactt 8913955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 6588949 - 6589055
Alignment:
Q  112 cttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaa 211  Q
    |||| ||||||||||||||||| ||  ||||||||||| | || |||| | ||||||||||||| |||||||||||   |  ||||||||||||||||      
T  6588949 cttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttgg 6589048  T
Q  212 tgagatc 218  Q
    |||||||    
T  6589049 tgagatc 6589055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 455
Target Start/End: Complemental strand, 6426759 - 6426635
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||||||| |||||||| ||| |||||||| || || ||||||||||    ||||  | | ||||||||||   |||||||| |||||||||||| |||    
T  6426759 tcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctgaag---gtatttgtgaagttttaaggaaatg 6426663  T
Q  428 ttctaagattagacatttgaacttagct 455  Q
    || |||| ||| ||||||||||||||||    
T  6426662 ttgtaagcttaaacatttgaacttagct 6426635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 6585156 - 6585208
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactt 451  Q
    |||||||||||||| |||||||||||||||| ||| ||||| |||||||||||    
T  6585156 gaaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactt 6585208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 6589174 - 6589297
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||||| ||| ||||||||  |  |||||||||| |    ||| | |||||||||| |||   ||||||||||||| || || |||||    
T  6589174 tcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaag---gtatttgtcaagtattgagaagatg 6589270  T
Q  428 ttctaagattagacatttgaacttagc 454  Q
    || ||||||||| ||||||||||||||    
T  6589271 ttgtaagattaggcatttgaacttagc 6589297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 498
Target Start/End: Original strand, 7994101 - 7994200
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    |||||||||||| | |||||||||| ||||| |||||| || ||||||||| ||||  | ||| ||| | ||||||| | |||||||||||||| |||||    
T  7994101 gaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttc 7994200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 498
Target Start/End: Original strand, 11936186 - 11936293
Alignment:
Q  391 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactt 490  Q
    |||||||||||||||||  ||| ||||||| || ||||| ||| |||||||||||||| ||| |||  ||||||| | ||||||| ||   | |||||||    
T  11936186 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactt 11936285  T
Q  491 tgaagttc 498  Q
    ||||||||    
T  11936286 tgaagttc 11936293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 498
Target Start/End: Original strand, 11948166 - 11948273
Alignment:
Q  391 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactt 490  Q
    |||||||||||||||||  ||| ||||||| || ||||| ||| |||||||||||||| ||| |||  ||||||| | ||||||| ||   | |||||||    
T  11948166 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactt 11948265  T
Q  491 tgaagttc 498  Q
    ||||||||    
T  11948266 tgaagttc 11948273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 6596567 - 6596633
Alignment:
Q  116 gtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgttt 182  Q
    |||||||||||||||||||||||||||||||| | | |||   | |||||||||||||||| |||||    
T  6596567 gtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttt 6596633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 14820873 - 14820819
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttag 453  Q
    |||||||||||||||| |||||||| ||||| |||| ||| ||||||||||||||    
T  14820873 gaaggtatttgtcaaggtttaaggaaatgttgtaagcttaaacatttgaacttag 14820819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 6596847 - 6596898
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 450  Q
    |||||||||||||||||||| |||||||||  ||||||||  ||||||||||    
T  6596847 gaaggtatttgtcaagttttcaggagatgtgataagattaagcatttgaact 6596898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 8913599 - 8913723
Alignment:
Q  29 tttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattt----tttgaaagatcgccatgttgccctgttgacttcgtttcttgg 124  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||  |  ||||    | |||| ||||  ||||||| |  |||| ||| |||||||||    
T  8913599 tttgttatccaagtgtcaatgtttacaacatttggttcttaatagcacttattttatatatgaatgatcaacatgttgtcaagttgtctttgtttcttgg 8913698  T
Q  125 tgatttggtttctataaaccttagt 149  Q
    | ||||||| |||||||||||||||    
T  8913699 taatttggtgtctataaaccttagt 8913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 454
Target Start/End: Complemental strand, 6410248 - 6410131
Alignment:
Q  334 tgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaa 433  Q
    |||||||||||| |||||||||||| ||||| ||||||||||   |||||    | ||||||   |||||||||||||||||||||  || ||||| |||    
T  6410248 tgtttgcttccatttttcccaatttacaactacttgatttgacgggttgccagcaaatatct---gaaggtatttgtcaagttttacagaaatgttgtaa 6410152  T
Q  434 gattagacatttgaacttagc 454  Q
    | |||  |||||| |||||||    
T  6410151 gcttaagcatttggacttagc 6410131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 6432629 - 6432557
Alignment:
Q  116 gtttcttggtgatttggtttctataaaccttagtgaatgtag-tatgctcacagaatcagccttgtttgcactc 188  Q
    |||||||| ||||||||| ||||||||||||||| | ||| | ||| ||||||||||||||| ||||| |||||    
T  6432629 gtttcttgctgatttggtgtctataaaccttagtaattgtcgatat-ctcacagaatcagccctgttttcactc 6432557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 1037512 - 1037638
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||| |||||||||||| ||| |||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||||||||||||||    
T  1037512 tcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatg 1037611  T
Q  428 ttctaagattagacatttgaacttagc 454  Q
    || |||| ||||||||||||| |||||    
T  1037612 ttgtaaggttagacatttgaatttagc 1037638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 333 - 448
Target Start/End: Original strand, 32785628 - 32785740
Alignment:
Q  333 atgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttcta 432  Q
    |||||| |||| | |||| ||||||| ||||| ||||||||||||  ||||  |||||||||||||||||||||||||||| |||||   ||||||||||    
T  32785628 atgttttcttctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttcta 32785724  T
Q  433 agattagacatttgaa 448  Q
    ||||||||||||||||    
T  32785725 agattagacatttgaa 32785740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 1037273 - 1037354
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  1037273 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactc 1037354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 45244994 - 45245058
Alignment:
Q  389 catatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttag 453  Q
    |||| ||| |||||| || ||||| |||||||||||||||| ||| ||||| ||||| |||||||    
T  45244994 cataactggagaaggaatgtgtcatgttttaaggagatgttgtaacattaggcatttaaacttag 45245058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 340 - 498
Target Start/End: Original strand, 18315133 - 18315291
Alignment:
Q  340 cttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattag 439  Q
    |||||| ||| |||||||| ||  ||||||||||||||   |||  ||||||| |||||||||||||||||||||||||| | || |||||| |||||||    
T  18315133 cttccattttccccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattag 18315232  T
Q  440 acatttgaacttagctcagtg-ttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    ||| ||||||||||||| ||| ||||| ||||||||| || |||||||||||| ||||||    
T  18315233 acagttgaacttagctc-gtgattcaagaatgaagctacgtggaatgaactttaaagttc 18315291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 32151545 - 32151432
Alignment:
Q  332 aatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 431  Q
    |||||||||||||| ||| || ||||| |||||||||||||||||  |||||  |||||||||||||||||| |||||||||||||||   ||||| |||    
T  32151545 aatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagtttta---agatgctct 32151449  T
Q  432 aagattagacatttgaa 448  Q
     ||||||| ||||||||    
T  32151448 gagattaggcatttgaa 32151432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 453
Target Start/End: Original strand, 17636268 - 17636370
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 450  Q
    |||||||| || |||||||||||  |   ||||| ||| ||||| ||  ||||||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  17636268 cccaatttgcagctgcttgatttacgagattgcaataaaatatcagagaaaggtatttgtcaagttttaaggggatgttctaatattaggcatttgaact 17636367  T
Q  451 tag 453  Q
    |||    
T  17636368 tag 17636370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 451
Target Start/End: Original strand, 34936031 - 34936134
Alignment:
Q  348 tttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttga 447  Q
    ||||||||||| || |||||||||||||||  ||||| |  ||||||| |  ||||||||| ||| |||||||||||||||| | | ||||||||||||     
T  34936031 tttcccaatttgcatctgcttgatttgagcgattgcagtggcatatctaatcaaggtatttatcatgttttaaggagatgttgtgacattagacatttgt 34936130  T
Q  448 actt 451  Q
    ||||    
T  34936131 actt 34936134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 478
Target Start/End: Complemental strand, 44736668 - 44736578
Alignment:
Q  388 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcg 478  Q
    |||||| |||||||||||||| ||| |||||||||| ||||||||| || | |||||| ||||||    | ||||||| ||||||||||||    
T  44736668 acatatttgaagaaggtatttctcatgttttaaggacatgttctaacataacacattttaacttaaacaactgttcaagaatgaagctgcg 44736578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 475
Target Start/End: Original strand, 28246206 - 28246290
Alignment:
Q  391 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagct 475  Q
    |||||||||||||||||  ||| ||||||| || ||||| ||| |||||||||||||| ||| |||  ||||||| | |||||||    
T  28246206 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgttgttcaagactgaagct 28246290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 17627668 - 17627778
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtccttta 206  Q
    |||| |||| ||||||||| ||||||| ||| ||||||||||| | ||| | ||||||   ||||||||||||||| |||||  |   || ||||||| |    
T  17627668 gttgtcttcatttcttggtaatttggtgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtccttca 17627767  T
Q  207 cttaatgagat 217  Q
    |||||||||||    
T  17627768 cttaatgagat 17627778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 17627911 - 17627952
Alignment:
Q  332 aatgtttgcttccaattttcccaattttcaactgcttgattt 373  Q
    |||||||||||||| ||| |||||||| ||||||||||||||    
T  17627911 aatgtttgcttccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 13470583 - 13470706
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||||||||| |||||||| || |||||||||||||   |||||| |  | ||||   | |||||||||||||||||||||||| |||    
T  13470583 tcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatc---aaaaggtatttgtcaagttttaaggatatg 13470679  T
Q  428 ttctaagattagacatttgaacttagc 454  Q
    || ||||||||| ||||||||||||||    
T  13470680 ttgtaagattaggcatttgaacttagc 13470706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 399 - 495
Target Start/End: Original strand, 51113700 - 51113796
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaag 495  Q
    |||||||||||||||||||||| |||||||| ||| ||||| |||||||| |||||| | ||||||| | ||||||| |  ||||||||||||||||    
T  51113700 gaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaag 51113796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 454
Target Start/End: Original strand, 514578 - 514702
Alignment:
Q  330 ataatgtttgcttccaattttccc-aattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgt 428  Q
    |||||||||||||| ||||||||| ||||| || ||  |||||||||||  |||   ||||||||||||  || |||| ||||||||||||| ||||||     
T  514578 ataatgtttgcttc-aattttcccgaatttgcagctaattgatttgagctattgtgataacatatctgacaaaagtatctgtcaagttttaaagagatgg 514676  T
Q  429 tctaagattagacatttgaacttagc 454  Q
    ||||||||||| ||||||||||||||    
T  514677 tctaagattaggcatttgaacttagc 514702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 498
Target Start/End: Original strand, 51764291 - 51764458
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||||| ||| |||||||| || ||||||||||| |    ||||| |  ||||||| |||   || | ||| ||||||||||||||||    
T  51764291 tcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaag---gtgtctgtgaagttttaaggagatg 51764387  T
Q  428 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    |||||||||||| ||||||||| || |  | ||||||| | ||||||| |  ||||||||||||| |||||    
T  51764388 ttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttc 51764458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 1657460 - 1657378
Alignment:
Q  366 cttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaa 448  Q
    ||||||||||||  |||||   ||||||||||||||||||||  ||| ||||||| || ||||| ||| ||||||||||||||    
T  1657460 cttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 454
Target Start/End: Complemental strand, 10614839 - 10614718
Alignment:
Q  330 ataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||   |||||| |  | ||| |||||   ||||||||||||||||||||| |||||    
T  10614839 ataaagtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaag---gtatttgtcaagttttaaggatatgtt 10614743  T
Q  430 ctaagattagacatttgaacttagc 454  Q
     ||||||||| ||||||||||||||    
T  10614742 gtaagattaggcatttgaacttagc 10614718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 454
Target Start/End: Complemental strand, 7977764 - 7977703
Alignment:
Q  393 tctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 454  Q
    ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||| ||||    
T  7977764 tctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagc 7977703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 465
Target Start/End: Original strand, 10169981 - 10170115
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||||||||| |||||| |||||| |||||  | ||| ||||||||| |  ||||| | ||||||| ||||   | |||||||||||||||||||| ||    
T  10169981 tcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacatatcggaag---gcatttgtcaagttttaaggaggtg 10170077  T
Q  428 ttctaagattagacatttgaacttagctcagtgttcaa 465  Q
    |||||| ||||| ||||| || ||||| || |||||||    
T  10170078 ttctaatattaggcatttaaatttagcccactgttcaa 10170115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 465
Target Start/End: Original strand, 10177506 - 10177640
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||||||||| |||||| |||||| |||||  | ||| ||||||||| |  ||||| | ||||||| ||||   | |||||||||||||||||||| ||    
T  10177506 tcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacatatcggaag---gcatttgtcaagttttaaggaggtg 10177602  T
Q  428 ttctaagattagacatttgaacttagctcagtgttcaa 465  Q
    |||||| ||||| ||||| || ||||| || |||||||    
T  10177603 ttctaatattaggcatttaaatttagcccactgttcaa 10177640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 15092071 - 15092123
Alignment:
Q  400 aaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 452  Q
    ||||||||| |||||||||||||| ||||| |||| ||| |||||||||||||    
T  15092071 aaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaactta 15092123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 498
Target Start/End: Original strand, 19468350 - 19468517
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||| |   ||||   ||||||| ||||   | |||||||||||||||||||| ||    
T  19468350 tcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcggaag---gcatttgtcaagttttaaggaggtg 19468446  T
Q  428 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    |||||| ||||| ||||| |||||||| || ||||||| | |||| || |  ||| ||||||||| |||||    
T  19468447 ttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttc 19468517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 449
Target Start/End: Complemental strand, 9581319 - 9581198
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||| | ||| |||||||| || ||||||||| || ||  ||||  |||||||||| ||  ||||||||||||||||||||  |||||    
T  9581319 tcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaaaagatg 9581220  T
Q  428 ttctaagattagacatttgaac 449  Q
    || | |||||||||||||||||    
T  9581219 ttgtcagattagacatttgaac 9581198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 449
Target Start/End: Complemental strand, 9586887 - 9586766
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||| | ||| |||||||| || ||||||||| || ||  ||||  |||||||||| ||  |||||||||||||||||||   |||||    
T  9586887 tcataatgtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgtcaagttttacaaagatg 9586788  T
Q  428 ttctaagattagacatttgaac 449  Q
    || | |||||||||||||||||    
T  9586787 ttgtcagattagacatttgaac 9586766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 452
Target Start/End: Complemental strand, 7554659 - 7554546
Alignment:
Q  339 gcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagatta 438  Q
    |||||||  |||||||||||  | |||||||||||||  | ||||  | |||||||| |||||||||||| |||  ||||||| ||||||  ||| ||||    
T  7554659 gcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacatta 7554560  T
Q  439 gacatttgaactta 452  Q
    ||||||||||||||    
T  7554559 gacatttgaactta 7554546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 19468038 - 19468166
Alignment:
Q  28 gtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcgtttcttggtga 127  Q
    |||||||||||||||||  | || | |||||||||| |||| || | || |  |||||||| |||| | ||||||    |||| ||| ||||||||||||    
T  19468038 gtttgttatccaagtgtgcaggtttgcaacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtga 19468137  T
Q  128 tttggtttctataaaccttagtgaatgta 156  Q
    ||| || ||||||||||||||||||||||    
T  19468138 tttagtgtctataaaccttagtgaatgta 19468166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 33161022 - 33160914
Alignment:
Q  79 attttttgaaagatcgccatgttgccctgttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagcctt 178  Q
    ||||| |||| ||||  |||||||||  |||  ||| |||||||| || |||||| ||||||||||||| || |||| | | ||||||||||||||| ||    
T  33161022 attttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcatt 33160923  T
Q  179 gtttgcact 187  Q
    |||| ||||    
T  33160922 gttttcact 33160914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 454
Target Start/End: Original strand, 494 - 598
Alignment:
Q  350 tcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaac 449  Q
    ||||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||| |||||||||||| ||||  ||||||||||||     
T  494 tcccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaat 593  T
Q  450 ttagc 454  Q
    |||||    
T  594 ttagc 598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 352 - 498
Target Start/End: Complemental strand, 32267699 - 32267556
Alignment:
Q  352 ccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactt 451  Q
    ||||||| || |||||||||||||||| |||   |  ||||||||||||||||||   |||| ||||||||| ||||| ||| |||||||||||||||||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  452 agctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    | | |||||||||| | |||| ||   || |||||||||||||||||    
T  32267599 atcccagtgttcaacagtgaaact---agaaatgaactttgaagttc 32267556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 41901390 - 41901510
Alignment:
Q  332 aatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 431  Q
    |||||| ||||||| ||| |||||||| || |||||||||||||||| |||   |  ||||| |||||||||||||  ||||||||||||||  |||| |    
T  41901390 aatgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggatgtgttgt 41901489  T
Q  432 aagattagacatttgaactta 452  Q
    || ||||||||||||||||||    
T  41901490 aacattagacatttgaactta 41901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 498
Target Start/End: Original strand, 41889402 - 41889572
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||||| ||| || ||||| || || ||||||||||||| |||   |  ||||| ||| |||||||||  |||||||||||||| |||    
T  41889402 tcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagttttaaggatatg 41889501  T
Q  428 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 498  Q
    || ||| |||||| ||||||||||| |    ||||||||| ||||||| |  | |||||||||| ||||||    
T  41889502 ttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttc 41889572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 28525187 - 28525116
Alignment:
Q  403 gtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagc 474  Q
    ||||||||||||||||||||||||||| |||||| ||  ||||||| |||    | ||||||||||||||||    
T  28525187 gtatttgtcaagttttaaggagatgttgtaagatgagggatttgaaattaagcaactgttcaataatgaagc 28525116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 28532195 - 28532084
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtccttta 206  Q
    |||| |||||||||||||||||||| | || || ||||||||| | |||  || ||| ||||||||| | ||||||||||||  |  ||| |||||||||    
T  28532195 gttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaattgtgataagctaacagaatcatctttgtttgcactcgctaggaactgtccttta 28532096  T
Q  207 cttaatgagatc 218  Q
    |||  |||||||    
T  28532095 cttggtgagatc 28532084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 1388 - 1438
Alignment:
Q  404 tatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 454  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1388 tatttgtcaagttttaaggagatgttataagattagacatttgaacttagc 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 407 - 326
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| ||||||||| |||||||| |||||||| |||||||||||||| ||||||||| | ||| || |||||||||||    
T  407 gttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactc 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 88998 - 88933
Alignment:
Q  397 aagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgtt 462  Q
    |||||||||||  |||  ||||||||||||||| |||||||||||||||||||||| || ||||||    
T  88998 aagaaggtattgatcagattttaaggagatgttgtaagattagacatttgaacttaactgagtgtt 88933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 89196 - 89137
Alignment:
Q  159 atgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgagatc 218  Q
    ||||||||||| ||||||||||||||||||||| |||| | ||||| ||| | |||||||    
T  89196 atgctcacagactcagccttgtttgcactcaattagaactatccttcactcagtgagatc 89137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 627 - 523
Alignment:
Q  393 tctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttg 492  Q
    |||||||||| |||||| ||| ||||||| ||||||| | | |||||| | |||||||||||  ||| ||||| | ||| ||| ||   |||||||||||    
T  627 tctgaagaagatatttgacaaattttaagtagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttg 528  T
Q  493 aagtt 497  Q
    |||||    
T  527 aagtt 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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