View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_53 (Length: 279)
Name: NF21440_high_53
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 10092007 - 10091910
Alignment:
| Q |
168 |
actaagaagatcataaaagtttaattgctacctatgctcatagctggaggaagtgcatattgaaggagaagaataaactgatataaaggatctacttg |
265 |
Q |
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| T |
10092007 |
actaagaagatcataaaagtttaattactacctatgctcatagctggaggaagtgcatattgaaggagaagaataaactgatataaaggatctacttg |
10091910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 10092051 - 10091994
Alignment:
| Q |
88 |
aaaagaacatatatattaatggtgtacaatttgactgaactataactaagaagatcat |
145 |
Q |
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| T |
10092051 |
aaaagaacatatatattaatggtgtacaatttgactgaactataactaagaagatcat |
10091994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 10097382 - 10097288
Alignment:
| Q |
167 |
gactaagaagatcataaaagtttaattgctacctatgctcatagctggaggaagtgcatattgaaggagaagaataaactgatataaaggatcta |
261 |
Q |
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| T |
10097382 |
gactaagaaaataataaaagtttatgtattacctatattcatggctggtggaagtgcatattgaaggagaagtacaaactgatataagggatcta |
10097288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 30669953 - 30670017
Alignment:
| Q |
196 |
tacctatgctcatagctggaggaagtgcatattgaaggagaagaataaactgatataaaggatct |
260 |
Q |
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| T |
30669953 |
tacctatattcatagctggtggaagtgcatattgaagtagaagtacaaactgatataaaggatct |
30670017 |
T |
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