View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_56 (Length: 261)
Name: NF21440_high_56
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_56 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 31 - 242
Target Start/End: Original strand, 6565254 - 6565465
Alignment:
| Q |
31 |
ataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatt |
130 |
Q |
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| T |
6565254 |
ataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatt |
6565353 |
T |
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| Q |
131 |
tgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaa |
230 |
Q |
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| T |
6565354 |
tgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaa |
6565453 |
T |
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| Q |
231 |
agagcactcact |
242 |
Q |
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| T |
6565454 |
agagcactcact |
6565465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 34261499 - 34261434
Alignment:
| Q |
171 |
caggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagca |
236 |
Q |
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| T |
34261499 |
caggtagataagttgaagaggaagctaagacatgaagagaatgttcacagagctttagaaagagca |
34261434 |
T |
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