View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_6 (Length: 513)
Name: NF21440_high_6
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 235 - 497
Target Start/End: Original strand, 1864476 - 1864744
Alignment:
| Q |
235 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgtctttataattgctatggtttaatatttggactat |
334 |
Q |
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| T |
1864476 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgcctttataattgctatggtttaatatttggactat |
1864575 |
T |
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| Q |
335 |
catttttaagaggttgataaataa------acacacacacataagttgcaattgataatttaatttatagactttcaatgtatatccatcccaacgattt |
428 |
Q |
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| T |
1864576 |
catttttaagaggttgataaataaaaacacacacacacacacaagttgcaattgataatttaatttatagactttcaatgtatatccatcccaacgattt |
1864675 |
T |
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| Q |
429 |
ttacatttttgttataataaaaaccgcaattgttttattaagcttctttttccttctcgtctttttagt |
497 |
Q |
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| T |
1864676 |
ttacatttttgttataataaaaaccgcaatagttttattaagtttctttttccttctcgtctttttagt |
1864744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 1863462 - 1863685
Alignment:
| Q |
13 |
aatatttcgaatcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgtt |
112 |
Q |
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| T |
1863462 |
aatatttcgaatcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgtt |
1863561 |
T |
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| Q |
113 |
gcgtaattgtgttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgcta |
212 |
Q |
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| T |
1863562 |
gcgtaattgtgttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgcta |
1863661 |
T |
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| Q |
213 |
acaacaaatttatatgcctcatta |
236 |
Q |
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| T |
1863662 |
acaacaaatttatatgcctcatta |
1863685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 51576285 - 51576228
Alignment:
| Q |
231 |
tcattaaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacatt |
288 |
Q |
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||||||| ||| |||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
51576285 |
tcattaattgttacatgttttaattaattttcaattcttgtttacttaatctcacatt |
51576228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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