View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_high_63 (Length: 246)

Name: NF21440_high_63
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_high_63
NF21440_high_63
[»] chr3 (11 HSPs)
chr3 (21-222)||(5155215-5155416)
chr3 (55-182)||(46490019-46490146)
chr3 (55-210)||(46469649-46469804)
chr3 (55-213)||(4582498-4582656)
chr3 (68-182)||(46497336-46497450)
chr3 (55-141)||(47398314-47398400)
chr3 (55-207)||(46478252-46478404)
chr3 (42-171)||(45900894-45901023)
chr3 (81-170)||(16023946-16024035)
chr3 (55-136)||(47414958-47415039)
chr3 (82-177)||(46507147-46507245)
[»] chr2 (3 HSPs)
chr2 (82-214)||(20154379-20154511)
chr2 (81-214)||(20143474-20143607)
chr2 (81-210)||(20169903-20170032)
[»] chr4 (4 HSPs)
chr4 (55-208)||(35160480-35160633)
chr4 (81-182)||(15555057-15555158)
chr4 (69-177)||(37147405-37147513)
chr4 (80-213)||(35154084-35154217)
[»] chr8 (3 HSPs)
chr8 (81-212)||(9677662-9677793)
chr8 (81-214)||(9693403-9693536)
chr8 (32-138)||(21465916-21466022)
[»] chr6 (1 HSPs)
chr6 (55-182)||(16967864-16967991)
[»] chr7 (2 HSPs)
chr7 (68-128)||(17734557-17734617)
chr7 (68-132)||(17743793-17743857)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 5155416 - 5155215
Alignment:
Q  21 agagcacgacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcaga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  5155416 agagcacgacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcaga 5155317  T
Q  121 gccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5155316 gccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggcgatgcgtagg 5155217  T
Q  221 ga 222  Q
    ||    
T  5155216 ga 5155215  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 46490146 - 46490019
Alignment:
Q  55 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 154  Q
    |||||| || || ||||| ||||| ||||||||||| |||||||| ||||||||||  || ||||||||||||||||||||||| ||||||||||| ||     
T  46490146 gttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagtacaacttggagc 46490047  T
Q  155 gacagtggcgaaaacacaatgttcttgt 182  Q
    || |||||||| ||||||||||||||||    
T  46490046 gaaagtggcgataacacaatgttcttgt 46490019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 46469804 - 46469649
Alignment:
Q  55 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 154  Q
    ||||||||||||  ||||||| ||  ||||||| |||||||| || ||||||||  ||||||||||| |||||||||  ||| | || | |||||| ||     
T  46469804 gttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataacttggagt 46469705  T
Q  155 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggc 210  Q
    ||||| ||||||||||||| |||||||| | |||||||  |||| |||||||||||    
T  46469704 gacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggc 46469649  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 4582498 - 4582656
Alignment:
Q  55 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 154  Q
    ||||||||| ||||| ||||| ||  | ||||||||||||||||| | |  |||||| || ||||||||||||||||| ||||| ||  ||||||| ||     
T  4582498 gttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagc 4582597  T
Q  155 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgat 213  Q
    || ||||| ||||||||||||||||| | | |||||||  |||| |||| |||||||||    
T  4582598 gaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgat 4582656  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 46497450 - 46497336
Alignment:
Q  68 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaa 167  Q
    |||||||| || |||||||||| |||||| || ||||||||||| ||||| ||||||| ||||||||||||||| |||||||| || || ||||| || |    
T  46497450 gtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgatgatgcttagcacaacttgtagtgaaagtggagata 46497351  T
Q  168 acacaatgttcttgt 182  Q
    |||| || |||||||    
T  46497350 acaccatattcttgt 46497336  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 47398314 - 47398400
Alignment:
Q  55 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttag 141  Q
    ||||||||| |||||||| || |||   ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  47398314 gttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgatgcttag 47398400  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 46478404 - 46478252
Alignment:
Q  55 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 154  Q
    ||||||||| || |||||||| || || ||||||| || ||| || ||||| |||||||||||||| |||| |||||| || ||||| |||||||| ||     
T  46478404 gttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaacttggagt 46478305  T
Q  155 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgttt 207  Q
    || ||||| |||||||| ||||| |||| | |||||||  |||| ||||||||    
T  46478304 gaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttt 46478252  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 45901023 - 45900894
Alignment:
Q  42 gagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttag 141  Q
    ||||||||| |  |||||||||||| ||||||| | | |||||||||| || |||||| |||||||| ||||||||||  |||||||| |||||||| ||    
T  45901023 gagaggcaaaagagttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgag 45900924  T
Q  142 tacaacttgaagagacagtggcgaaaacac 171  Q
     | |||||| || || ||||| ||||||||    
T  45900923 aataacttggagcgagagtggagaaaacac 45900894  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 16024035 - 16023946
Alignment:
Q  81 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaaca 170  Q
    ||||||||| ||||||||| |||||||| || ||||| || ||||||||||| | ||| || ||||||||||| || || || |||||||    
T  16024035 ggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaaca 16023946  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 47414958 - 47415039
Alignment:
Q  55 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatg 136  Q
    ||||||||| ||| ||||||| ||   |||||||||||||||||  || ||||||| ||||||||||||||| || ||||||    
T  47414958 gttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagccagccgcaatgatg 47415039  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 46507147 - 46507245
Alignment:
Q  82 gaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcg---atgatgcttagtacaacttgaagagacagtggcgaaaacacaatgtt 177  Q
    ||||||||| |||| ||| ||||| ||||||||||||||||| ||||||   |||||||| || | ||||||||  || ||||| ||||||| ||||||    
T  46507147 gaggaagtcaagaatctgttgttgagtgggaccctcagagccggcagcgattatgatgctgagaataacttgaatcgagagtggtgaaaacataatgtt 46507245  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 20154511 - 20154379
Alignment:
Q  82 gaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttg 181  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||| ||| ||| |  |||||||| || |||| ||||||||||||||||||||||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttg 20154412  T
Q  182 tgtaattctttcaagaacagatgtttggcgatg 214  Q
    | | ||| |||||||||||||||||||||||||    
T  20154411 tctgattgtttcaagaacagatgtttggcgatg 20154379  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 20143607 - 20143474
Alignment:
Q  81 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 180  Q
    |||||||||||| ||| || |||||||||||| | ||||| ||||||||||| | ||| || |||| ||| || || |||||||||||||| ||||||||    
T  20143607 ggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaatttggagtgatagtggcgaaaacacgatgttctt 20143508  T
Q  181 gtgtaattctttcaagaacagatgtttggcgatg 214  Q
    || | ||| |||||| ||||||||| ||||||||    
T  20143507 gtctgattgtttcaacaacagatgtctggcgatg 20143474  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 20169903 - 20170032
Alignment:
Q  81 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 180  Q
    |||||||||||| ||| || |||| ||||||||| ||||| |||| ||| || | ||| || |||| |||||| || ||||| |||||||| | ||| ||    
T  20169903 ggaggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataaggctgagcacaatttgaagtgatagtggtgaaaacacgacgttttt 20170002  T
Q  181 gtgtaattctttcaagaacagatgtttggc 210  Q
    || | ||| |||||| ||||||||| ||||    
T  20170003 gtctgattgtttcaacaacagatgtctggc 20170032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 35160633 - 35160480
Alignment:
Q  55 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 154  Q
    ||||||||| |||||||||||  |  |||||||||| |||||||| |||||||| | ||||||||||||||||| ||| ||||| || |||||||| |||    
T  35160633 gttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttggaga 35160534  T
Q  155 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttg 208  Q
    |||| |||||||||||| |||||||| | | |||||||  |||| |||||||||    
T  35160533 gacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttg 35160480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 15555158 - 15555057
Alignment:
Q  81 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 180  Q
    |||||||||||||||| || || ||||||| ||||||||||||||||||||||||||| || | ||||||||  || || || |||||||||||||| ||    
T  15555158 ggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgagaataacttgaatcgagagaggtgaaaacacaatgttgtt 15555059  T
Q  181 gt 182  Q
    ||    
T  15555058 gt 15555057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 37147513 - 37147405
Alignment:
Q  69 tggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaa 168  Q
    |||||||| | | ||||||||||||||  || ||||||||||||||||  |||||||||||||| || ||||| |||||||| || ||||  ||||||||    
T  37147513 tggatttaaagtcgaggaagtcgagaatttgttgttgtgtgggacccttggagccagcagcgataatacttagaacaacttggagcgacaagggcgaaaa 37147414  T
Q  169 cacaatgtt 177  Q
    |||||||||    
T  37147413 cacaatgtt 37147405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 35154217 - 35154084
Alignment:
Q  80 tggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttct 179  Q
    |||||||||| ||||||||| ||| |||||| ||| ||||||||||||||||||||    || || ||||| |||||||  ||||||||||| || ||||    
T  35154217 tggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagcactacttggagagacaaaggcgaaaacacgatattct 35154118  T
Q  180 tgtgtaattctttcaagaacagatgtttggcgat 213  Q
    | | | |||| ||  |||| ||||||||||||||    
T  35154117 tttctgattcctttgagaaaagatgtttggcgat 35154084  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 212
Target Start/End: Original strand, 9677662 - 9677793
Alignment:
Q  81 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 180  Q
    ||||||||||||||||||| ||||| || |||||||||||||||||||||||||| || || |||||||| ||||||| ||| ||||| || | ||| ||    
T  9677662 ggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgtt 9677761  T
Q  181 gtgtaattctttcaagaacagatgtttggcga 212  Q
    || | |||||||  |||| |||||||||||||    
T  9677762 gtctgattcttttgagaagagatgtttggcga 9677793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 9693403 - 9693536
Alignment:
Q  81 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 180  Q
    |||||||||| |||||||| ||||| || ||||| ||||||||| ||||||||||||| || |||||||| ||||||| ||| ||||| || |  |||||    
T  9693403 ggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattctt 9693502  T
Q  181 gtgtaattctttcaagaacagatgtttggcgatg 214  Q
    || | |||||||  |||| |||||||||||||||    
T  9693503 gtctgattcttttgagaagagatgtttggcgatg 9693536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 21465916 - 21466022
Alignment:
Q  32 gaaacaagttgagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcga 131  Q
    |||||||| ||||||||||  | ||| ||||  |||||||| || || ||||||||   |||||| || |||||||| ||||| ||||||||||||||||    
T  21465916 gaaacaagctgagaggcaaagtagtttagattttcagtggacttggattggaggaatgagagaagttgttgttgtgtcggaccttcagagccagcagcga 21466015  T
Q  132 tgatgct 138  Q
    |||||||    
T  21466016 tgatgct 21466022  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 16967864 - 16967991
Alignment:
Q  55 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 154  Q
    ||||||||| ||  ||||||| || |||||||| | || ||| || ||||| |||||||||||||| |||  |||||| |||||||  |||||||| ||     
T  16967864 gttgagatgatcgatggatttggattggaggaatttgaaaagttgttgttgagtgggaccctcagaaccaaaagcgattatgcttaacacaacttggagt 16967963  T
Q  155 gacagtggcgaaaacacaatgttcttgt 182  Q
    || ||||| |||||||| ||||| ||||    
T  16967964 gagagtggtgaaaacacgatgttgttgt 16967991  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 17734617 - 17734557
Alignment:
Q  68 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcag 128  Q
    ||||||| |||||||||||||  |||||| |||| ||||||||||||||| ||||| ||||    
T  17734617 gtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggcag 17734557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 17743857 - 17743793
Alignment:
Q  68 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgat 132  Q
    ||||||| |||||||||||||  |||||| |||| ||||||||||||||| ||||| | ||||||    
T  17743857 gtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat 17743793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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