View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_65 (Length: 238)
Name: NF21440_high_65
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_65 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 25948120 - 25947901
Alignment:
| Q |
19 |
tctgccccgctgacacccctagagacaacatactcccttgttttaaagctcgtgaaggaaaaatagaacctaaaaagatcaatattaatcaacataaagt |
118 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25948120 |
tctgccccattgacacccctagaaacaacatactcccttgttttaaagctcgtgaaggaaaaatagaacctaaaaagatcaatattaatcaacataaagt |
25948021 |
T |
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| Q |
119 |
aattaacagtggcgacacgcaaaagcatccaatcacccgatctagaggcaaaccctaatttttgcaacatagttacatacctgaatacaagccatagaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | | |
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| T |
25948020 |
aattaacagtggcgacacgcaaaagcatccaatcacccgatctagaggcaaaccctaatttttgcaacatagttacatacctgattacaagccacataca |
25947921 |
T |
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| Q |
219 |
agatctcagaaccacatagc |
238 |
Q |
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|||||||||||||||||||| |
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| T |
25947920 |
agatctcagaaccacatagc |
25947901 |
T |
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