View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_high_70 (Length: 230)

Name: NF21440_high_70
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_high_70
NF21440_high_70
[»] chr3 (1 HSPs)
chr3 (15-214)||(54392976-54393178)
[»] chr4 (2 HSPs)
chr4 (15-89)||(47551721-47551795)
chr4 (23-92)||(47551825-47551894)
[»] scaffold0245 (1 HSPs)
scaffold0245 (15-92)||(8124-8199)
[»] scaffold0229 (1 HSPs)
scaffold0229 (15-92)||(8452-8527)
[»] chr8 (1 HSPs)
chr8 (15-92)||(1336370-1336448)
[»] chr1 (3 HSPs)
chr1 (15-92)||(1282444-1282519)
chr1 (15-92)||(1283475-1283550)
chr1 (15-70)||(46396397-46396452)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 54393178 - 54392976
Alignment:
Q  15 attatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtcccag-tccctcgcattattcagtt 113  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54393178 attatactaccaataaaattgtttctaaaaactttgtgtcggcacaagcccacaaactatacaacatgcatccgtcccagctccctcgcattattcagtt 54393079  T
Q  114 atgaaatagaaaaagagttgtatcaaaattagt--tatattttaagccaaatactttaacatgctcttttatgtaaataaaaaactctttgtggccttgg 211  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54393078 atgaaatagaaaaagagttgtatcaaaattagttatatatttcaagccaaatactttaacatgctcttttatgtaaataaaatactctttgtggccttgg 54392979  T
Q  212 tag 214  Q
    |||    
T  54392978 tag 54392976  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 47551795 - 47551721
Alignment:
Q  15 attatactacc-aataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgt 89  Q
    ||||||||||| || ||||||||| |||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  47551795 attatactacctaaaaaaattgtt-caaaaaactttgtgtgggcacaagcccacaaactctacaacatgcatccgt 47551721  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 47551894 - 47551825
Alignment:
Q  23 accaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 92  Q
    ||||| ||||| ||||| |||| |||||||||||||||||| |||||||| ||||||||| ||| |||||    
T  47551894 accaaaaaaatggtttctaaaaactttgtgtgggcacaagcccacaaactctacaacatgtatctgtccc 47551825  T

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Target: scaffold0245 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 8124 - 8199
Alignment:
Q  15 attatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 92  Q
    ||||||||||||| ||||||||||| ||||   |||||||||||||||| |||||| | |||||| ||||||||||||    
T  8124 attatactaccaaaaaaattgtttctaaaaa--ttgtgtgggcacaagcccacaaattctacaacctgcatccgtccc 8199  T

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Target: scaffold0229 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 8452 - 8527
Alignment:
Q  15 attatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 92  Q
    ||||||||||||| ||||||||||| ||||   |||||||||||||||| |||||| | |||||| ||||||||||||    
T  8452 attatactaccaaaaaaattgtttctaaaaa--ttgtgtgggcacaagcccacaaattctacaacctgcatccgtccc 8527  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 1336370 - 1336448
Alignment:
Q  15 attatactaccaataaaa-ttgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 92  Q
    ||||||||||||| |||| ||||||| |||| |||||||||||||||||| ||||| || | |||||||||||| ||||    
T  1336370 attatactaccaaaaaaaattgtttctaaaaactttgtgtgggcacaagcccacaagctctccaacatgcatccatccc 1336448  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 1282444 - 1282519
Alignment:
Q  15 attatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 92  Q
    ||||||||||||| ||||||||||| ||||   |||||||||||||||| |||||| | |||||| ||||||||||||    
T  1282444 attatactaccaaaaaaattgtttctaaaaa--ttgtgtgggcacaagcccacaaattctacaacctgcatccgtccc 1282519  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 1283475 - 1283550
Alignment:
Q  15 attatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 92  Q
    ||||||||||||| ||||||||||| ||||   |||||||||||||||| |||||| | |||||| ||||||||||||    
T  1283475 attatactaccaaaaaaattgtttctaaaaa--ttgtgtgggcacaagcccacaaattctacaacctgcatccgtccc 1283550  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 46396452 - 46396397
Alignment:
Q  15 attatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaa 70  Q
    ||||||||||||| ||||||||||| ||||  ||||||||||||||||| ||||||    
T  46396452 attatactaccaaaaaaattgtttctaaaaattttgtgtgggcacaagcccacaaa 46396397  T

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