View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_72 (Length: 227)
Name: NF21440_high_72
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_72 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 172323 - 172533
Alignment:
| Q |
3 |
tttgcttatagttcatgtcagtaatatttattttgaaagcaaaacgagtaggtttcgtactcttaccttagggattgtaatatcatgagtattttcttaa |
102 |
Q |
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| T |
172323 |
tttgcttataattcatgtcagtaatatttattttgagagcaaaacgagtaggtttcgtactcttaccttaggatttgtaatatcatgagtattttcttaa |
172422 |
T |
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| Q |
103 |
ttcattctgcattcacattgatcttgctgagatttcatctacttctccatagttggtaatgtgattcatgttcacccatgcctgttcgtg-ctattgagc |
201 |
Q |
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| T |
172423 |
ttcatcccgcattcacggtgatcttgctgagatttcatccgcttctccattgttgttaacatgattcatgtttacccatgcctgttcgtgccgattgagc |
172522 |
T |
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| Q |
202 |
ttttgattttt |
212 |
Q |
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||||||||||| |
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| T |
172523 |
ttttgattttt |
172533 |
T |
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Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 31045066 - 31044906
Alignment:
| Q |
1 |
tctttgcttatagttcatgtcagtaatatttattttgaaagcaaaacgagtaggtttcgtactcttaccttagggattgtaatatcatgagtattttctt |
100 |
Q |
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| T |
31045066 |
tctttgcttatagttcatgtcagtt---ttgattttgaacgcaaaacgagtaggtttcgtactcttaccatagggtttgtagtatcatgagtattttctc |
31044970 |
T |
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| Q |
101 |
aattcattctgcattcacattgatcttgctgagatttcatctacttctccatagttggtaatgt |
164 |
Q |
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| T |
31044969 |
aattcattctgcattcacagtgatcttgctgagatttcatctgcttctccattgttggtaatgt |
31044906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 18255 - 18412
Alignment:
| Q |
1 |
tctttgcttatagttcatgtcagtaatatttattt------tgaaagcaaaacgagtaggtttcgtactcttaccttagggattgtaatatcatgagtat |
94 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||| |
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| T |
18255 |
tctttgcttattgttcatgtcagtaatatttattttgattttgaaagcaaaacgagtaggtttcgtactctaaccaaagggtttgcaatatcatgagtat |
18354 |
T |
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| Q |
95 |
tttcttaattcattctgcattcacattgatcttgctgagatttcatctacttctccat |
152 |
Q |
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||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
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| T |
18355 |
tttctcaattcattctgcattcaaagtgatcttgctgagatttcatctgcttctccat |
18412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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