View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_high_77 (Length: 206)
Name: NF21440_high_77
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_high_77 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 30047588 - 30047417
Alignment:
| Q |
12 |
gagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047588 |
gagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaac |
30047489 |
T |
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| Q |
112 |
cagagttcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcag |
183 |
Q |
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| T |
30047488 |
cagagtgcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcag |
30047417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 30061929 - 30061758
Alignment:
| Q |
12 |
gagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30061929 |
gagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaac |
30061830 |
T |
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| Q |
112 |
cagagttcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcag |
183 |
Q |
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| T |
30061829 |
cagagtgcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcag |
30061758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 30031317 - 30031146
Alignment:
| Q |
12 |
gagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaac |
111 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
30031317 |
gagatgaatgagaaaacaaaaatagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaac |
30031218 |
T |
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| Q |
112 |
cagagttcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcag |
183 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30031217 |
cagagtccaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagccaatcag |
30031146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 30221530 - 30221698
Alignment:
| Q |
15 |
atgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaaccag |
114 |
Q |
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||||||||||| ||||||| | ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
30221530 |
atgaatgagaagacaaaaaaatcaaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccag |
30221629 |
T |
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| Q |
115 |
agttcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcag |
183 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
30221630 |
agtccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaagccaatcag |
30221698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 30227944 - 30227787
Alignment:
| Q |
12 |
gagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaac |
111 |
Q |
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|||| ||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
30227944 |
gagaagaatgagaagacaaaaacatcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccaatcagtgaaggaaatgcaaaaac |
30227845 |
T |
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| Q |
112 |
cagagttcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaa |
169 |
Q |
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|||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||||| |
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| T |
30227844 |
cagagtccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaa |
30227787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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