View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_high_80 (Length: 203)

Name: NF21440_high_80
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_high_80
NF21440_high_80
[»] chr5 (19 HSPs)
chr5 (45-101)||(36103620-36103676)
chr5 (44-101)||(9161000-9161057)
chr5 (40-95)||(11917418-11917473)
chr5 (40-94)||(27886432-27886486)
chr5 (45-94)||(667630-667679)
chr5 (50-95)||(15068483-15068528)
chr5 (52-101)||(32521231-32521280)
chr5 (40-95)||(701232-701288)
chr5 (50-94)||(12166180-12166224)
chr5 (50-94)||(30265807-30265851)
chr5 (40-100)||(35358949-35359009)
chr5 (43-94)||(2226900-2226951)
chr5 (40-95)||(36177120-36177175)
chr5 (45-95)||(8409008-8409058)
chr5 (40-94)||(30002024-30002078)
chr5 (51-101)||(38433721-38433771)
chr5 (40-94)||(42544671-42544725)
chr5 (50-94)||(333293-333337)
chr5 (50-94)||(12681085-12681129)
[»] chr6 (8 HSPs)
chr6 (40-101)||(25136784-25136845)
chr6 (45-95)||(13801997-13802047)
chr6 (45-95)||(13810884-13810934)
chr6 (40-95)||(5874167-5874222)
chr6 (40-94)||(12270569-12270623)
chr6 (51-95)||(33550343-33550387)
chr6 (40-94)||(10590863-10590917)
chr6 (50-94)||(5287920-5287964)
[»] chr4 (12 HSPs)
chr4 (40-101)||(40900092-40900153)
chr4 (40-95)||(29644140-29644195)
chr4 (40-95)||(50570973-50571028)
chr4 (40-94)||(5261980-5262034)
chr4 (40-94)||(30193991-30194045)
chr4 (40-94)||(48996097-48996151)
chr4 (49-94)||(8176613-8176658)
chr4 (45-94)||(23937534-23937583)
chr4 (45-94)||(36077590-36077639)
chr4 (40-95)||(29636786-29636841)
chr4 (50-101)||(40806827-40806878)
chr4 (40-95)||(42557737-42557792)
[»] scaffold0059 (1 HSPs)
scaffold0059 (40-95)||(69555-69610)
[»] scaffold0029 (1 HSPs)
scaffold0029 (44-101)||(40584-40641)
[»] chr8 (9 HSPs)
chr8 (40-101)||(33068278-33068339)
chr8 (49-101)||(18170034-18170086)
chr8 (40-95)||(3006587-3006642)
chr8 (40-95)||(5803261-5803316)
chr8 (40-94)||(10661166-10661220)
chr8 (49-95)||(18633608-18633654)
chr8 (51-94)||(36910347-36910390)
chr8 (45-95)||(14549241-14549291)
chr8 (40-94)||(44672801-44672855)
[»] chr7 (19 HSPs)
chr7 (44-101)||(1335334-1335391)
chr7 (40-101)||(13852321-13852382)
chr7 (50-94)||(31983012-31983056)
chr7 (40-95)||(10671833-10671888)
chr7 (50-101)||(12117622-12117673)
chr7 (40-95)||(47069681-47069736)
chr7 (40-95)||(47204472-47204527)
chr7 (40-94)||(11206374-11206428)
chr7 (40-94)||(24361510-24361564)
chr7 (40-94)||(47903260-47903314)
chr7 (45-94)||(7209285-7209334)
chr7 (60-99)||(2854328-2854367)
chr7 (40-95)||(3213237-3213292)
chr7 (40-91)||(5932708-5932759)
chr7 (40-91)||(8768982-8769033)
chr7 (40-90)||(18673210-18673260)
chr7 (40-94)||(27054748-27054802)
chr7 (45-95)||(43429193-43429243)
chr7 (43-101)||(48675127-48675185)
[»] chr3 (9 HSPs)
chr3 (40-101)||(35402214-35402275)
chr3 (40-94)||(6004403-6004457)
chr3 (45-95)||(33360971-33361021)
chr3 (50-94)||(21586859-21586903)
chr3 (50-94)||(34794617-34794661)
chr3 (40-95)||(4669662-4669717)
chr3 (40-94)||(32880313-32880367)
chr3 (40-94)||(51149673-51149727)
chr3 (50-95)||(43030439-43030484)
[»] scaffold0013 (1 HSPs)
scaffold0013 (40-95)||(128649-128704)
[»] chr2 (8 HSPs)
chr2 (40-95)||(36413655-36413710)
chr2 (40-94)||(9811403-9811457)
chr2 (45-91)||(25298270-25298316)
chr2 (40-94)||(44035319-44035373)
chr2 (40-94)||(44979785-44979839)
chr2 (50-94)||(11375924-11375968)
chr2 (40-95)||(16578648-16578703)
chr2 (40-89)||(17916872-17916921)
[»] chr1 (14 HSPs)
chr1 (40-95)||(8211291-8211346)
chr1 (40-95)||(20493761-20493816)
chr1 (40-95)||(32954050-32954105)
chr1 (40-94)||(1161758-1161812)
chr1 (50-95)||(5155358-5155403)
chr1 (51-100)||(39256646-39256695)
chr1 (62-101)||(29389067-29389106)
chr1 (51-90)||(42789628-42789667)
chr1 (49-100)||(44918564-44918615)
chr1 (40-95)||(45691810-45691865)
chr1 (40-90)||(51252435-51252485)
chr1 (50-95)||(11899028-11899073)
chr1 (50-95)||(16529515-16529560)
chr1 (40-99)||(33910792-33910852)
[»] scaffold0308 (1 HSPs)
scaffold0308 (40-94)||(5899-5953)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 36103676 - 36103620
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  36103676 ggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaaatcaatg 36103620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 9161000 - 9161057
Alignment:
Q  44 tggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    ||||| |||||||||| ||||| ||||||||||||||| ||||||||||||| |||||    
T  9161000 tggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaatg 9161057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 11917418 - 11917473
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  11917418 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 11917473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 27886486 - 27886432
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  27886486 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 27886432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 667679 - 667630
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  667679 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 667630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 15068483 - 15068528
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  15068483 ggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 15068528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 32521280 - 32521231
Alignment:
Q  52 tttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||||||| ||||| ||||||||| ||||| |||||||||||||||||||    
T  32521280 tttggttcggttgatttttaaaaattcatccaaaccaaaccaaatcaatg 32521231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 701232 - 701288
Alignment:
Q  40 catgtggttcggtttggttcagttgaatttt-aaaaagtcatctaaaccaaaccaaa 95  Q
    ||||||||| |||||||||| ||||| |||| ||||||||||| |||||||||||||    
T  701232 catgtggtttggtttggttcggttgattttttaaaaagtcatccaaaccaaaccaaa 701288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 12166224 - 12166180
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  12166224 ggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 12166180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 30265851 - 30265807
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  30265851 ggtttggttcggttgatttttaaaaagtcatcaaaaccaaaccaa 30265807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 35358949 - 35359009
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaat 100  Q
    |||| |||| |||||||||| |||||  |||||||||||||| ||||||||||||| ||||    
T  35358949 catgcggtttggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaaccaat 35359009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 2226951 - 2226900
Alignment:
Q  43 gtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||| |||||||||| ||||| ||||||||| ||||| ||||||||||||    
T  2226951 gtggtttggtttggttcggttgatttttaaaaactcatccaaaccaaaccaa 2226900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 36177175 - 36177120
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||| ||||||||    
T  36177175 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaaccaaa 36177120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 8409008 - 8409058
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||||||||| ||||| ||||||||||||| | |||||||||||||    
T  8409008 ggtttggtttggttcggttgatttttaaaaagtcacccaaaccaaaccaaa 8409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 30002024 - 30002078
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||  ||||||||||||||| ||||||||||||    
T  30002024 catgcggtttggtttggttcggttgttttttaaaaagtcatccaaaccaaaccaa 30002078  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 38433721 - 38433771
Alignment:
Q  51 gtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    ||||||||| ||||| |||||||||||| || ||||||||||||| |||||    
T  38433721 gtttggttcggttgatttttaaaaagtcctccaaaccaaaccaaaccaatg 38433771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 42544671 - 42544725
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| |||||| |||||||| ||||||||||||    
T  42544671 catgcggtttggtttggttcggttgatttttaagaagtcatccaaaccaaaccaa 42544725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 333337 - 333293
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    ||||||||||  |||| ||||||||||||||| ||||||||||||    
T  333337 ggtttggttcgattgatttttaaaaagtcatccaaaccaaaccaa 333293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 12681129 - 12681085
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||||||| ||||| ||||||||| ||||| ||||||||||||    
T  12681129 ggtttggttcggttgatttttaaaaattcatccaaaccaaaccaa 12681085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 25136784 - 25136845
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||| ||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||    
T  25136784 catgcggttcggtttggttcggttggattttaaaaagtcatccaaaccaaaccaaaccaatg 25136845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 13802047 - 13801997
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||    
T  13802047 ggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaaa 13801997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 13810934 - 13810884
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||    
T  13810934 ggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaaa 13810884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 5874222 - 5874167
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  5874222 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 5874167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 12270569 - 12270623
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  12270569 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 12270623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 33550343 - 33550387
Alignment:
Q  51 gtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||    
T  33550343 gtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 33550387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 10590863 - 10590917
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| |||||||||||||||  |||||||||||    
T  10590863 catgcggtttggtttggttcggttgatttttaaaaagtcatcccaaccaaaccaa 10590917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 5287964 - 5287920
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||||||| ||||| ||||||||||||||| |||| |||||||    
T  5287964 ggtttggttcggttgatttttaaaaagtcatccaaacgaaaccaa 5287920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 40900153 - 40900092
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||| |||| |||||||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  40900153 catgcggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaaaccaatg 40900092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 29644195 - 29644140
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  29644195 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 29644140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 50571028 - 50570973
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  50571028 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 50570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 5262034 - 5261980
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| ||||| |||||||||| ||||||||||||||| ||||||||||||    
T  5262034 catgcggtttggtttagttcagttgatttttaaaaagtcatccaaaccaaaccaa 5261980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 30194045 - 30193991
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  30194045 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 30193991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 48996097 - 48996151
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    ||||||||| |||||||||| ||||| ||||||||||| ||| ||||||||||||    
T  48996097 catgtggtttggtttggttcggttgatttttaaaaagttatccaaaccaaaccaa 48996151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 8176658 - 8176613
Alignment:
Q  49 cggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||    
T  8176658 cggtttggtttggttgatttttaaaaagtcatctaaaccaaaccaa 8176613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 23937583 - 23937534
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  23937583 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 23937534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 36077590 - 36077639
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  36077590 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 36077639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 29636786 - 29636841
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| |||||||||| |||| |||||||||||||    
T  29636786 catgcggtttggtttggttcggttgatttttaaaaagccatccaaaccaaaccaaa 29636841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 40806878 - 40806827
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||||||||| ||||| ||||||||| ||||| ||||||||||||| |||||    
T  40806878 ggtttggttcggttgatttttaaaaaatcatccaaaccaaaccaaaccaatg 40806827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 42557737 - 42557792
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  42557737 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaatcaaa 42557792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 69610 - 69555
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    ||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  69610 catgtggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 69555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 40641 - 40584
Alignment:
Q  44 tggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    ||||| |||||||||| ||||| ||||||||||||||| ||||||||||||| |||||    
T  40641 tggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaatg 40584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 33068278 - 33068339
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||| |||| |||||||||||||||| ||||||||||||||| |||||||| |||| |||||    
T  33068278 catgcggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaatcaaaccaatg 33068339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 18170086 - 18170034
Alignment:
Q  49 cggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||    
T  18170086 cggtttggttcggttgagttttaaaaagtcatcaaaaccaaaccaaaccaatg 18170034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 3006642 - 3006587
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  3006642 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 3006587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 5803316 - 5803261
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  5803316 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 5803261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 10661166 - 10661220
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  10661166 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 10661220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 18633654 - 18633608
Alignment:
Q  49 cggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  18633654 cggtttggttcggttgagttttaaaaagtcatcaaaaccaaaccaaa 18633608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 36910390 - 36910347
Alignment:
Q  51 gtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||    
T  36910390 gtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 36910347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 14549241 - 14549291
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||||| ||| ||||| ||||||||||||||| |||||||||||||    
T  14549241 ggtttggtttgattcggttgatttttaaaaagtcatccaaaccaaaccaaa 14549291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 44672801 - 44672855
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| ||||||||||  |||| ||||||||||||||| ||||||||||||    
T  44672801 catgcggtttggtttggttcgattgatttttaaaaagtcatccaaaccaaaccaa 44672855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 1335334 - 1335391
Alignment:
Q  44 tggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    ||||| |||||||||| ||||| |||||||||||| || |||||||||||||||||||    
T  1335334 tggtttggtttggttcggttgatttttaaaaagtcctccaaaccaaaccaaatcaatg 1335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 13852321 - 13852382
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||| |||||    
T  13852321 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaatg 13852382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 31983056 - 31983012
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||    
T  31983056 ggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaa 31983012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 10671833 - 10671888
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  10671833 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 10671888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 12117622 - 12117673
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||| |||||    
T  12117622 ggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaatg 12117673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 47069681 - 47069736
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  47069681 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 47069736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 47204527 - 47204472
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  47204527 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 47204472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 11206428 - 11206374
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  11206428 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 11206374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 24361564 - 24361510
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    ||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||||||    
T  24361564 catgtggtttggtttggttcagttgattttaaaaaaatcatccaaaccaaaccaa 24361510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 47903260 - 47903314
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  47903260 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 47903314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 7209334 - 7209285
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  7209334 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 7209285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 2854328 - 2854367
Alignment:
Q  60 agttgaattttaaaaagtcatctaaaccaaaccaaatcaa 99  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  2854328 agttgacttttaaaaagtcatttaaaccaaaccaaatcaa 2854367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 3213292 - 3213237
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||| |||||||||    
T  3213292 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaatcaaaccaaa 3213237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 5932708 - 5932759
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaac 91  Q
    |||| |||| ||||||||| |||||| ||||||||||||||| |||||||||    
T  5932708 catgcggtttggtttggttaagttgatttttaaaaagtcatccaaaccaaac 5932759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 8769033 - 8768982
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaac 91  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||    
T  8769033 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 8768982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 18673260 - 18673210
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaa 90  Q
    |||||| || ||||| |||||||||||||| ||||||||||| ||||||||    
T  18673260 catgtgatttggtttagttcagttgaatttcaaaaagtcatccaaaccaaa 18673210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 27054802 - 27054748
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| |||||||||| |||| ||||||||||||    
T  27054802 catgcggtttggtttggttcggttgatttttaaaaagccatccaaaccaaaccaa 27054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 43429193 - 43429243
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||||||||| ||||| ||||||||||||||| |||| ||||||||    
T  43429193 ggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaaccaaa 43429243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 48675127 - 48675185
Alignment:
Q  43 gtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||||| | |||||||| ||||| |||||| |||||||| || ||||||||||||||||    
T  48675127 gtggtttgatttggttcggttgatttttaagaagtcatccaagccaaaccaaatcaatg 48675185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 35402275 - 35402214
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||| |||||    
T  35402275 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaatg 35402214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 6004457 - 6004403
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  6004457 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 6004403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 33360971 - 33361021
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  33360971 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 33361021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 21586903 - 21586859
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||    
T  21586903 ggtttgattcagttgatttttaaaaagtcatccaaaccaaaccaa 21586859  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 34794617 - 34794661
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  34794617 ggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 34794661  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 4669717 - 4669662
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| |||||||||||||||  ||||||||||||    
T  4669717 catgcggtttggtttggttcggttgatttttaaaaagtcatccgaaccaaaccaaa 4669662  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 32880313 - 32880367
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    ||||||||| | |||||||| ||||| ||||||||||||||  ||||||||||||    
T  32880313 catgtggtttgatttggttcggttgatttttaaaaagtcatacaaaccaaaccaa 32880367  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 51149727 - 51149673
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||| ||| ||||||||||||    
T  51149727 catgcggtttggtttggttcggttgatttttaaaaagtgatccaaaccaaaccaa 51149673  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 43030439 - 43030484
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||||||||| ||||| ||||||||||||||| |||| ||||||||    
T  43030439 ggtttggttcggttgatttttaaaaagtcatccaaactaaaccaaa 43030484  T

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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 128649 - 128704
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    ||||||||| |||||||||| ||||| ||||||||||||||| ||||| |||||||    
T  128649 catgtggtttggtttggttctgttgatttttaaaaagtcatccaaaccgaaccaaa 128704  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 36413710 - 36413655
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  36413710 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 36413655  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 9811403 - 9811457
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  9811403 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 9811457  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 25298316 - 25298270
Alignment:
Q  45 ggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaac 91  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  25298316 ggttcggtttggttcggttgatttttaaaaagtcatccaaaccaaac 25298270  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 44035319 - 44035373
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  44035319 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 44035373  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 44979839 - 44979785
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  44979839 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 44979785  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 11375924 - 11375968
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  11375924 ggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 11375968  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 16578648 - 16578703
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| ||||||||||  |||| ||||||||||||||| |||||||||||||    
T  16578648 catgcggtttggtttggttcgattgatttttaaaaagtcatccaaaccaaaccaaa 16578703  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 17916921 - 17916872
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaa 89  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||    
T  17916921 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaa 17916872  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 8211291 - 8211346
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  8211291 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 8211346  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 20493761 - 20493816
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  20493761 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 20493816  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 32954050 - 32954105
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  32954050 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 32954105  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 1161812 - 1161758
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    ||||||||| |||||||||  ||||| ||||||||||||||| ||||||||||||    
T  1161812 catgtggtttggtttggtttggttgatttttaaaaagtcatccaaaccaaaccaa 1161758  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 5155403 - 5155358
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  5155403 ggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaa 5155358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 39256695 - 39256646
Alignment:
Q  51 gtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaat 100  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||| ||||    
T  39256695 gtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaat 39256646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 29389067 - 29389106
Alignment:
Q  62 ttgaattttaaaaagtcatctaaaccaaaccaaatcaatg 101  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  29389067 ttgatttttaaaaagtcatccaaaccaaaccaaatcaatg 29389106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 42789667 - 42789628
Alignment:
Q  51 gtttggttcagttgaattttaaaaagtcatctaaaccaaa 90  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  42789667 gtttggttcagttgatttttaaaaagtcatccaaaccaaa 42789628  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 44918564 - 44918615
Alignment:
Q  49 cggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaatcaat 100  Q
    ||||||||||| ||||| ||||||||||||||| |||| |||||||| ||||    
T  44918564 cggtttggttcggttgatttttaaaaagtcatccaaacgaaaccaaaccaat 44918615  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 45691810 - 45691865
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| |||| ||||||||    
T  45691810 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaactaaaccaaa 45691865  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 51252485 - 51252435
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaa 90  Q
    ||||||||| |||||||||  ||||| ||||||||||||||| ||||||||    
T  51252485 catgtggtttggtttggttgggttgatttttaaaaagtcatccaaaccaaa 51252435  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 11899028 - 11899073
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||||||||| ||||| ||||||||| ||||| |||||||||||||    
T  11899028 ggtttggttcggttgatttttaaaaaatcatccaaaccaaaccaaa 11899073  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 16529560 - 16529515
Alignment:
Q  50 ggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaaa 95  Q
    |||||||||| ||||| ||||||||||||||  |||||||||||||    
T  16529560 ggtttggttcggttgatttttaaaaagtcattcaaaccaaaccaaa 16529515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 33910852 - 33910792
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaa-ccaaaccaaatcaa 99  Q
    ||||||||| | |||||||| ||||| ||||||||| ||||| ||| ||||||||||||||    
T  33910852 catgtggtttgatttggttcggttgatttttaaaaattcatccaaaaccaaaccaaatcaa 33910792  T

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Target: scaffold0308 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 5953 - 5899
Alignment:
Q  40 catgtggttcggtttggttcagttgaattttaaaaagtcatctaaaccaaaccaa 94  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||||||||||||    
T  5953 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 5899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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