View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_10 (Length: 472)
Name: NF21440_low_10
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 21507136 - 21507584
Alignment:
| Q |
18 |
cacttatctctccttctcatattgatattgtaagtactatattgtcattcttaatttagttaacatctatgattatgtattgatttgtcattatattgtt |
117 |
Q |
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| T |
21507136 |
cacttatctctccttctcatattgatattgtaagtactatattgtcattcttaatttagttaacatctatgattatgtattgatttgtcattatattgtt |
21507235 |
T |
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| Q |
118 |
acattttaccatgtttgtgagaaggtactagtacaatattatgtttcatggttttaaattgcggttgtagtttttggctacaatgtgatactttgtatcg |
217 |
Q |
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| T |
21507236 |
acattttaccatgtttgtgagaaggtactagtacagtattatgtatcatggttttaaattgcggttgtagtttttggctacaatgtgacactttgtatcg |
21507335 |
T |
|
| Q |
218 |
cggaaaaatgtggttgatgcggtcgcaattgtgatcacaatattgttgttgtaaaacctctacaatttctgtcaactaataagtgctctaatctaaagta |
317 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21507336 |
cggaaaaatgtggttgatgcggccgcaattgcgatcacaatattgttgttgtaaaacctctacaatttctgtctactaataagtgctctaatctaaagta |
21507435 |
T |
|
| Q |
318 |
ctttttcccttgtccttttctttttgtttgcagaggaaaaagaaaattaacgggttgcaaaagaaagaggaacttgaaaaagaggtatttggattcatat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21507436 |
ctttttcccttgtccttttctttttgtttgcagaggaaaaagaaaattaacgggttgcaaaagaaagaggaacttgaaaaagaggtatttggattcatat |
21507535 |
T |
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| Q |
418 |
atattttatggaaaaatttcataattaattactacatgagtataatcta |
466 |
Q |
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| T |
21507536 |
atattttatggaaaaatttcataattaattactacatgagtttaatcta |
21507584 |
T |
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