View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_11 (Length: 467)
Name: NF21440_low_11
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_11 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 63 - 467
Target Start/End: Complemental strand, 42762447 - 42762041
Alignment:
| Q |
63 |
attttatttgaaaacgatcatcatatat--gatagaaaaagttaaaataagtaaggaaattcagatatggaaaagacaaaatttgtatttttgattatgt |
160 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42762447 |
attttatttgaaaacgatcatcatatatatgatagaaaaagttaaaataagtaaggaaattcagatatggaaaagacaaaatttgtatttttgattatat |
42762348 |
T |
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| Q |
161 |
cgctaatcattagaaatgtaaaatttggggaacaannnnnnnatatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttga |
260 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42762347 |
cgctaagcattagaaatgtaaaatttggggaacaatttttttatatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttga |
42762248 |
T |
|
| Q |
261 |
aatttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42762247 |
aatttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgt |
42762148 |
T |
|
| Q |
361 |
ctccagaggatgcgtaagaatgcttttgcttgatgttgaccttctcaaataacnnnnnnnnatagtaatctataagtttgatctggtatcttaagtaata |
460 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
42762147 |
ctgcagaggatgcgtaagaatgcttttgctttatgttgaccttctcaaatatcttttttttatagtaatctataagtttgatcttgtaacttaagtaata |
42762048 |
T |
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| Q |
461 |
aagtttc |
467 |
Q |
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|| |||| |
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| T |
42762047 |
aattttc |
42762041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 203 - 361
Target Start/End: Complemental strand, 42743482 - 42743320
Alignment:
| Q |
203 |
atatctctaacttcctttgttattttaatatttt----tagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttga |
298 |
Q |
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|||||||||| |||||||||||||||||| ||| ||||||| ||||||| |||||||||||| | |||||||||||| ||||||||||||| ||| |
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| T |
42743482 |
atatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatga |
42743383 |
T |
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| Q |
299 |
attaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtc |
361 |
Q |
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| T |
42743382 |
attaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtc |
42743320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 203 - 361
Target Start/End: Complemental strand, 42752841 - 42752679
Alignment:
| Q |
203 |
atatctctaacttcctttgttattttaatatttt----tagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttga |
298 |
Q |
| |
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|||||||||| |||||||||||||||||| ||| ||||||| ||||||| |||||||||||| | |||||||||||| ||||||||||||| ||| |
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| T |
42752841 |
atatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatga |
42752742 |
T |
|
| Q |
299 |
attaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtc |
361 |
Q |
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| T |
42752741 |
attaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtc |
42752679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 263 - 388
Target Start/End: Original strand, 42735319 - 42735444
Alignment:
| Q |
263 |
tttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtct |
362 |
Q |
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|||||| |||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||||||| ||| ||| ||| ||||| |||| ||| |
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| T |
42735319 |
tttttaatgttagggagctagcctttcagagtctcacttaccacctcataagttgtttccattgataagtggtgcaaatgccaacgttgataatgtatct |
42735418 |
T |
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| Q |
363 |
ccagaggatgcgtaagaatgcttttg |
388 |
Q |
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| || | ||||||||||||||||| |
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| T |
42735419 |
gccgaacaagcgtaagaatgcttttg |
42735444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 381
Target Start/End: Complemental strand, 42769146 - 42769028
Alignment:
| Q |
263 |
tttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtct |
362 |
Q |
| |
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|||| |||| ||||||||||||||||||||| | || |||||||||||||| |||||||| |||||||| | ||||| |||| ||||| || ||| |
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| T |
42769146 |
ttttaattgatagggagctagcctttcagagtcccacttgccacctcataagttctacccattaataagtgcagttgatgccaaagctgatcgtgcatct |
42769047 |
T |
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| Q |
363 |
ccagaggatgcgtaagaat |
381 |
Q |
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|||| ||||||||||||| |
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| T |
42769046 |
tcagatgatgcgtaagaat |
42769028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 42716787 - 42716706
Alignment:
| Q |
272 |
ttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgat |
353 |
Q |
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|||||| ||||||||||||||| | ||||| | ||| |||||||||| |||||||||| || |||||||||||||| |||| |
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| T |
42716787 |
ttagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataactggtgctgatgtcaaatatgat |
42716706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 203 - 361
Target Start/End: Original strand, 23040992 - 23041149
Alignment:
| Q |
203 |
atatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaatta |
302 |
Q |
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|||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||| | | ||||||||||| ||||||||||||| |||| || |
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| T |
23040992 |
atatctctaatttcctttgttattttaat-tctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagcatgaacta |
23041090 |
T |
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| Q |
303 |
ccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtc |
361 |
Q |
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|| | ||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |
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| T |
23041091 |
ccgcggcataagttgtatccattgattagtgctgctgatgccaaatttgatcatgtgtc |
23041149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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