View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_14 (Length: 452)
Name: NF21440_low_14
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_14 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 9032915 - 9033154
Alignment:
| Q |
2 |
cacagaacatcaaataacattcagatgataaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttgtaatcagagtcagatcaatat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9032915 |
cacagaacatcaaataacattcagatgataaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttataatcagagtcagatcaatat |
9033014 |
T |
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| Q |
102 |
tggatcactcatcctatgtttagttccacatttgtacctcccaaaatcacgtttgagttaatcaaacatgattctaacataaattgttatgtttagcttc |
201 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9033015 |
tggatccctcatcctatgtttagttccacatttgtacctcccaaaatcacgtttgagttaatcaaacatgattcgaacataaattgttatgtttagcttc |
9033114 |
T |
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| Q |
202 |
caattttaaaatcgattccagacctaaattatgcctaaaa |
241 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
9033115 |
caattttaaaatcgattccagacctaaattatacctaaaa |
9033154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 346 - 446
Target Start/End: Original strand, 9033150 - 9033250
Alignment:
| Q |
346 |
taaaaatcattgtttggtgaatgtatttaaacggaaataaatttacatttaacttactttcaacccaaataattcggtcaaaatttatttaatcatctcg |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9033150 |
taaaaatcattgtttggtgaatgtatttaaacggaaataaatttacatttaacttactttcaacccaaataattcggtcaaaatttatttaatcatctcg |
9033249 |
T |
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| Q |
446 |
g |
446 |
Q |
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| T |
9033250 |
g |
9033250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 42726124 - 42726016
Alignment:
| Q |
114 |
cctatgtttagttccacatttgtacctcccaaaatcacgtttgagttaatcaaacatgattctaacataaattgttatgtttagcttccaattttaaaat |
213 |
Q |
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||||||||| |||| ||||||||| |||||| |||||| ||||| || |||||||||||| | |||| |||||||||| | |||| | ||||| ||| |
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| T |
42726124 |
cctatgtttggttctacatttgtatctcccataatcacatttgacttggtcaaacatgatttgaccatatattgttatgtctgacttctagttttagaat |
42726025 |
T |
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| Q |
214 |
cgattccag |
222 |
Q |
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|||||||| |
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| T |
42726024 |
tgattccag |
42726016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 11458891 - 11458977
Alignment:
| Q |
114 |
cctatgtttagttccacatttgtacctcccaaaatcacgtttgagttaatcaaacatgattctaacataaattgttatgtttagctt |
200 |
Q |
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||||||||| |||||||||| ||||| ||| |||||| ||| ||||||||||| ||||| | |||||||||||| |||| |||| |
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| T |
11458891 |
cctatgtttgtttccacatttttacctaccagaatcacattttggttaatcaaacgtgatttgaccataaattgttacgtttggctt |
11458977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 34933273 - 34933370
Alignment:
| Q |
105 |
atcactcatcctatgtttagttccacatttgtacctcccaaaatcacgtttgagttaatcaaacatgattctaacataaattgttatgtttagcttcc |
202 |
Q |
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|||||| | |||| |||||||| || ||||| ||||||||||||| ||||| |||| ||||| ||||| | |||||||| |||||||| |||||| |
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| T |
34933273 |
atcacttagcctacgtttagtttcatgtttgttcctcccaaaatcatgtttgggttagtcaaatgtgatttgatcataaatttttatgtttggcttcc |
34933370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 20098 - 19990
Alignment:
| Q |
114 |
cctatgtttagttccacatttgtacctcccaaaatcacgtttgagttaatcaaacatgattctaacataaattgttatgtttagcttccaattttaaaat |
213 |
Q |
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||||||| | |||| ||||||||| |||||| |||||| ||||| || |||||||||||| | |||| |||||||||| | |||| | ||||| ||| |
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| T |
20098 |
cctatgtgtggttctacatttgtatctcccataatcacatttgacttggtcaaacatgatttgaccatatattgttatgtctgacttctagttttagaat |
19999 |
T |
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| Q |
214 |
cgattccag |
222 |
Q |
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|||||||| |
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| T |
19998 |
tgattccag |
19990 |
T |
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