View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_low_16 (Length: 440)

Name: NF21440_low_16
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_low_16
NF21440_low_16
[»] chr3 (2 HSPs)
chr3 (197-431)||(19921852-19922085)
chr3 (205-431)||(19922767-19922986)
[»] chr1 (9 HSPs)
chr1 (216-431)||(6389971-6390188)
chr1 (276-427)||(6419625-6419780)
chr1 (330-426)||(6397193-6397292)
chr1 (276-426)||(6403282-6403436)
chr1 (345-429)||(6426936-6427020)
chr1 (325-427)||(6414263-6414368)
chr1 (324-429)||(6377737-6377842)
chr1 (349-429)||(6371899-6371979)
chr1 (345-394)||(6379513-6379562)
[»] chr8 (2 HSPs)
chr8 (27-65)||(39430191-39430229)
chr8 (131-181)||(39430075-39430125)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 197 - 431
Target Start/End: Complemental strand, 19922085 - 19921852
Alignment:
Q  197 tatgaccggtacttttctttactagagcctatactctactttacctctcttcttgaactctagaccctgtcattgtactttgcaactttgaaccatttca 296  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19922085 tatgacctgtacttttcttgactagagcctatactctactttacctctcttcttgaactctagaccctgtcattgtactttgcaactttgaaccatttca 19921986  T
Q  297 ctctatgcttctgtttcaaatggaagatagcaacagatcttggggagtagacatttactggaaccatttcaagttcatccatttcgcccagtttcttcac 396  Q
    |||| ||||| |||||||||||  |||||||||||||||||||| || ||||||||||  |||||||||| ||||||| |||||||||||||||||||||    
T  19921985 ctctctgcttatgtttcaaatgttagatagcaacagatcttgggaagaagacatttacccgaaccatttccagttcat-catttcgcccagtttcttcac 19921887  T
Q  397 accaccgattttcaatagcaacttgtaagtattat 431  Q
    |||||  ||||| || |||||||||||||||||||    
T  19921886 accacttattttgaacagcaacttgtaagtattat 19921852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 205 - 431
Target Start/End: Original strand, 19922767 - 19922986
Alignment:
Q  205 gtacttttctttactagagcctatactctactttacctctcttcttgaactctagaccctgtcattgtactttgcaactttgaaccatttcactctatgc 304  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19922767 gtacttttcttgactagagcctatactctactttacctctcttcttgaactctagaccctgtcattgtactttgcaactttgaaccatttcactctctgc 19922866  T
Q  305 ttctgtttcaaatggaagatagcaacagatcttggggagtagacatttactggaaccatttcaagttcatccatttcgcccagtttcttcacaccaccga 404  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||  |||||||||| ||||||||       ||||||||||||||||||| ||    
T  19922867 ttctgtttcaaatggaagatagcaacagatcttgggaagaagacatttacccgaaccatttccagttcatc-------cccagtttcttcacaccactga 19922959  T
Q  405 ttttcaatagcaacttgtaagtattat 431  Q
    |||| || |||||||||||||||||||    
T  19922960 ttttgaacagcaacttgtaagtattat 19922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 216 - 431
Target Start/End: Original strand, 6389971 - 6390188
Alignment:
Q  216 tactagagcctatactctactttacctctcttcttgaactctagaccctgtca----ttgtactttgcaactttgaaccatttcactctatgcttctgtt 311  Q
    ||||||||||||| || |||||||| ||||||||||||  |||||||||||||     ||||||||||| ||||||||||||||||||| ||||||||||    
T  6389971 tactagagcctatgctgtactttacgtctcttcttgaa--ctagaccctgtcactctctgtactttgcacctttgaaccatttcactctctgcttctgtt 6390068  T
Q  312 tcaaatggaagatagcaacagatcttggggagtagacatttactggaaccatttcaagttcatccatttcgcccagtttcttcacaccaccgattttcaa 411  Q
    ||||||||||||||||| |||||||| || || | |||||||||||||||||||| |||||||||||||||| |||||||| ||| |||| |||||| ||    
T  6390069 tcaaatggaagatagcagcagatctttggaagaaaacatttactggaaccatttccagttcatccatttcgctcagtttctccactccactgattttgaa 6390168  T
Q  412 tagcaacttgtaagtattat 431  Q
     |||||||||||||||||||    
T  6390169 cagcaacttgtaagtattat 6390188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 427
Target Start/End: Original strand, 6419625 - 6419780
Alignment:
Q  276 ttgcaactttgaaccatttc-actctatgcttctgtttcaaatggaag---atagcaacagatcttggggagtagacatttactggaaccatttcaagtt 371  Q
    |||||||||||||||||||| ||||| ||||||| ||| |||||||||   || | | |||||| |||| || ||| |||||||||||| ||||  ||||    
T  6419625 ttgcaactttgaaccatttccactctctgcttctctttaaaatggaagtagatggaagcagatcctgggaagaagatatttactggaacaattttcagtt 6419724  T
Q  372 catccatttcgcccagtttcttcacaccaccgattttcaatagcaacttgtaagta 427  Q
    ||| |||||| |||| |||||||| ||||| ||||| ||| | |||||||||||||    
T  6419725 cattcatttcacccaatttcttcaaaccactgatttccaacaacaacttgtaagta 6419780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 426
Target Start/End: Original strand, 6397193 - 6397292
Alignment:
Q  330 cagatcttggggagtagacatttactggaaccatttcaagttcatccatttcgcccagtttcttca---caccaccgattttcaatagcaacttgtaagt 426  Q
    ||||||||||| || ||| |||||||||| ||||||| |||||||||||||| |||| ||||||||    |||||| |||||||| | ||||||||||||    
T  6397193 cagatcttgggaagaagatatttactggacccatttccagttcatccatttcacccaatttcttcaaactaccaccaattttcaacaacaacttgtaagt 6397292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 426
Target Start/End: Original strand, 6403282 - 6403436
Alignment:
Q  276 ttgcaactttgaaccatttc-actctatgcttctgtttcaaatggaaga---tagcaacagatcttggggagtagacatttactggaaccatttcaagtt 371  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||   | | |  ||||||||||  | ||| |||||||||||||||||  | ||    
T  6403282 ttgcaactttgaaccatttccactctccgcttctgtttcaaatggaagaagatggaagtagatcttgggaggaagatatttactggaaccattttcaatt 6403381  T
Q  372 catccatttcgcccagtttcttcacaccaccgattttcaatagcaacttgtaagt 426  Q
    |||||||||| | |  ||||||  ||||   ||||||||| | ||||||||||||    
T  6403382 catccatttcactctatttcttagcacctttgattttcaacaacaacttgtaagt 6403436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 6426936 - 6427020
Alignment:
Q  345 agacatttactggaaccatttcaagttcatccatttcgcccagtttcttcacaccaccgattttcaatagcaacttgtaagtatt 429  Q
    |||||||||||||| ||||||  |||||||||||||| | || ||||||| || ||| ||||||||| | |||||||| ||||||    
T  6426936 agacatttactggacccattttcagttcatccatttcactcaatttcttcgcaacactgattttcaacaacaacttgttagtatt 6427020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 427
Target Start/End: Original strand, 6414263 - 6414368
Alignment:
Q  325 agcaacagatcttggggagtagacatttactggaaccatttcaagttcatccatttcgcccagtttcttca---caccaccgattttcaatagcaacttg 421  Q
    ||||||| ||||||||  | ||| |||||||||||||||||  |||||||||||||| |||  ||||||||   ||||||| |||||||| | |||| ||    
T  6414263 agcaacaaatcttgggaggaagagatttactggaaccattttcagttcatccatttcaccctatttcttcatagcaccaccaattttcaacaacaacctg 6414362  T
Q  422 taagta 427  Q
    ||||||    
T  6414363 taagta 6414368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 429
Target Start/End: Original strand, 6377737 - 6377842
Alignment:
Q  324 tagcaacagatcttggggagtagacatttactggaaccatttcaagttcatccatttcgcccagtttcttcacaccaccgattttcaatagcaacttgta 423  Q
    ||||| ||| |||||||  | |||||||||||||| ||||||| | ||||||| |||| |||| ||||||||  ||||| ||||  || | |||||||||    
T  6377737 tagcagcaggtcttgggaggaagacatttactggacccatttccaattcatccgtttcacccaatttcttcaacccacccatttggaacaacaacttgta 6377836  T
Q  424 agtatt 429  Q
    ||||||    
T  6377837 agtatt 6377842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 429
Target Start/End: Original strand, 6371899 - 6371979
Alignment:
Q  349 atttactggaaccatttcaagttcatccatttcgcccagtttcttcacaccaccgattttcaatagcaacttgtaagtatt 429  Q
    |||||||||||||||||  |||||||||||||| |||  |||||   ||||||| |||||||| | |||||||| ||||||    
T  6371899 atttactggaaccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaacaacttgttagtatt 6371979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 6379513 - 6379562
Alignment:
Q  345 agacatttactggaaccatttcaagttcatccatttcgcccagtttcttc 394  Q
    |||||||||||||| ||||||| | |||||||||||| |||| |||||||    
T  6379513 agacatttactggacccatttccaattcatccatttcacccaatttcttc 6379562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 39430229 - 39430191
Alignment:
Q  27 aatagacaaggtttacctaattttagattttgttaagct 65  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39430229 aatagacaaggtttacctaattttagattttgttaagct 39430191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 39430125 - 39430075
Alignment:
Q  131 aacttctgatatatacatggggttgtaa-gttctcttacaacttcctttgtt 181  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  39430125 aacttctgatatatacatggg-ttgtaaagttctcttacaacttcctttgtt 39430075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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