View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_17 (Length: 436)
Name: NF21440_low_17
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 36568482 - 36568885
Alignment:
| Q |
20 |
cctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcaggtagatatatcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36568482 |
cctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcaggtagatatatcat |
36568581 |
T |
|
| Q |
120 |
tatcaannnnnnnnnnnntaaagaccttgttcttttgttttgtttcatctttcacacttcccttataaatcaagatttaaaataaaaggagaaaaataat |
219 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36568582 |
tatcaaacacacacacactaaagaccttgttcttttgttttgtttcatctttcacacttcccttataaatcaagatttaaaataaaaggagaaaaataat |
36568681 |
T |
|
| Q |
220 |
aatttttctttgctactgcttctgcttctgcttcccttttctgtcaataactttcttccttgatttgaaccattaacggttctctgatgcttggatagaa |
319 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36568682 |
aatttttctttgctactgc------ttctgcttcccttttctgtcaataactttcttccttgatttgaaccattaacgattctctgatgcttggatagaa |
36568775 |
T |
|
| Q |
320 |
agaggaaaagattgtttgttaaactatgatgtacttacctgtcttcctctttcatttctttctttttgaagaagttatgattattagtctaaagtttttc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36568776 |
agaggaaaagattgtttgttaaactatgatgtacttacctgtcttcctctttcatttctttctttttgaagaagttatgattattagtctaaagtttttc |
36568875 |
T |
|
| Q |
420 |
acttctgctt |
429 |
Q |
| |
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|||||||||| |
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| T |
36568876 |
acttctgctt |
36568885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 21038446 - 21038358
Alignment:
| Q |
20 |
cctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcaggt |
108 |
Q |
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|||||||||||||| ||||| |||||||| || || |||||||| |||||||||| |||||| ||||| ||||| |||||||||||||| |
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| T |
21038446 |
cctactccttctcagattcttattggtcctacacaattctcttgtcctgtttgctgcaaaaccttcaacagatacaacaacatgcaggt |
21038358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 13518821 - 13518748
Alignment:
| Q |
26 |
ccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaa |
99 |
Q |
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||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||||||||| ||||| ||||| |
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| T |
13518821 |
ccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaa |
13518748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 13608354 - 13608281
Alignment:
| Q |
26 |
ccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaa |
99 |
Q |
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||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||||||||| ||||| ||||| |
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| T |
13608354 |
ccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaa |
13608281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 41937608 - 41937702
Alignment:
| Q |
20 |
cctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcaggtagatat |
114 |
Q |
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||||| ||| |||| ||||| || |||||||| ||||| || |||||| |||| | ||| || ||||||||||| ||||||||||||||| |||| |
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| T |
41937608 |
cctacccctgctcagattctaatcggtccaacacagttttcatgccctctttgtttcaagaccttcaatagatacaacaacatgcaggtatatat |
41937702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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