View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_19 (Length: 430)
Name: NF21440_low_19
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 199 - 417
Target Start/End: Complemental strand, 28987019 - 28986801
Alignment:
| Q |
199 |
atgattgaatttgactggtttttaaattaccaaacatatttttacaatagaacttaaacataaatagattgcattagaatggttgcttggcaatccggct |
298 |
Q |
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| T |
28987019 |
atgattgaatttgactggtttttaaattaccaaacatatttttacaatagaacttaaacattaatagattgcattagaatggttgcttggcaatccggct |
28986920 |
T |
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| Q |
299 |
cagtttatgtttaggctagcatctatggttctcaaaatgttcgatcagattgatacatacaaaaagaagaagatgaaaataataattaatcttgtaatta |
398 |
Q |
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| T |
28986919 |
cagtttatgtttagagtagcatctatggttctcaaaatgttcgatcagattgatacatacaaaaagaagaagatgaaaataataattaatcttgtaatta |
28986820 |
T |
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| Q |
399 |
aaattgtatgtttatattg |
417 |
Q |
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| T |
28986819 |
aaattgtatgtttatattg |
28986801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 28987218 - 28987056
Alignment:
| Q |
16 |
gatgtccacaggccaggggtctatctatagtcaaaatctgaannnnnnnnnnnn-cagttagtatataaaatgaaatagaaggaagacnnnnnnn-gaca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
28987218 |
gatgtccacaggccaggggtctatctatagtcaaaatctgaatttttgtgtttttcagttagtatataaaatgaaatagaaggaagacttttttttgaca |
28987119 |
T |
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| Q |
114 |
gatcagaagcaaagaccatatacgtccgaattgataattcttgatgtaatatgttccatttcg |
176 |
Q |
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| T |
28987118 |
gatcagaagcaaagaccatatacgtccgaattgataattcttgatgtaatatgttccatttcg |
28987056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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