View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_low_2 (Length: 607)

Name: NF21440_low_2
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_low_2
NF21440_low_2
[»] chr8 (26 HSPs)
chr8 (17-396)||(25489168-25489547)
chr8 (439-589)||(25489590-25489740)
chr8 (234-396)||(25646202-25646369)
chr8 (439-589)||(25694742-25694902)
chr8 (234-361)||(24913783-24913915)
chr8 (439-541)||(25322047-25322147)
chr8 (269-396)||(25603826-25603951)
chr8 (439-546)||(25604000-25604107)
chr8 (297-396)||(25799544-25799640)
chr8 (455-532)||(25799658-25799735)
chr8 (21-132)||(25385301-25385413)
chr8 (334-396)||(25694637-25694699)
chr8 (439-508)||(25646412-25646481)
chr8 (17-76)||(25321367-25321426)
chr8 (323-396)||(25321934-25322004)
chr8 (540-589)||(25799778-25799827)
chr8 (439-507)||(24913638-24913706)
chr8 (540-589)||(25322181-25322230)
chr8 (247-336)||(25569119-25569208)
chr8 (498-541)||(25385539-25385582)
chr8 (542-589)||(25646535-25646582)
chr8 (543-589)||(24913536-24913582)
chr8 (68-163)||(25603303-25603397)
chr8 (263-311)||(25321889-25321937)
chr8 (546-589)||(25604136-25604179)
chr8 (207-235)||(25385414-25385442)
[»] scaffold0070 (5 HSPs)
scaffold0070 (234-361)||(17826-17951)
scaffold0070 (439-508)||(17680-17749)
scaffold0070 (542-589)||(17579-17626)
scaffold0070 (17-76)||(18458-18517)
scaffold0070 (207-235)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (237-282)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (237-282)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 25489168 - 25489547
Alignment:
Q  17 aactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489168 aactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaaca 25489267  T
Q  117 actattcatgatatatcatcaaagagtttaattactggaagcaattgnnnnnnnnnaaacatcttttttgcttgttgatttcgggcaaacaatatatttt 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||||||||||    
T  25489268 actattcatgatatatcatcaaatagtttaattactggaagcaattgtttttttttaaacatcttttttgcttgttgatttcgtgcaaacaatatatttt 25489367  T
Q  217 tgtacttttgacacaagattatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25489368 tgtacttttgacacaagattatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagaaagtt 25489467  T
Q  317 cagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489468 cagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25489547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 439 - 589
Target Start/End: Original strand, 25489590 - 25489740
Alignment:
Q  439 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtgttgatccttattcactagtcgatttctttaaaagcaaaaggaaaca 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489590 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtgttgatccttattcactagtcgatttctttaaaagcaaaaggaaaca 25489689  T
Q  539 tatgaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489690 tatgaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 25489740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 234 - 396
Target Start/End: Original strand, 25646202 - 25646369
Alignment:
Q  234 attatgtagcaacctagtaagtaga-----caccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 328  Q
    |||||||||||||||||||||||||     ||||||||| ||| |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||    
T  25646202 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaactaaaaactgattagaaggttcagtaatagaag 25646301  T
Q  329 atcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 396  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25646302 atcttttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 439 - 589
Target Start/End: Original strand, 25694742 - 25694902
Alignment:
Q  439 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtgttgatccttattcactagtcgatttctttaaaagcaaaaggaaaca 538  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  25694742 gagaggggatacaacataaatggatacagtacacacgatttacatgcttctgtgatgatccttattcactagtcgatttctttaaaagcaaaaggaaata 25694841  T
Q  539 tatgaag----------acagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 589  Q
    ||| |||          ||||||||||||||| || |||||||||||||||||||||||||    
T  25694842 tattaaggaaatagcctacagttgaaaggacagaccagaagtagcaagacatcaatccaaa 25694902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 234 - 361
Target Start/End: Complemental strand, 24913915 - 24913783
Alignment:
Q  234 attatgtagcaacctagtaagtagac-----accacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 328  Q
    ||||||||||||||||||||||||||     |||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  24913915 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaaccaaaaactgattagaaagttcagtaatagaag 24913816  T
Q  329 atcttttcttcctattcttacacaatgagtcaa 361  Q
    |||||||||||| ||||||||||||||||||||    
T  24913815 atcttttcttcccattcttacacaatgagtcaa 24913783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 439 - 541
Target Start/End: Original strand, 25322047 - 25322147
Alignment:
Q  439 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtgttgatccttattcactagtcgatttctttaaaagcaaaaggaaaca 538  Q
    ||||||||||||||  |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  25322047 gagaggggatacaa--taaatggatacagtacacacaatttacatgcttctgtgatgatccttattcactagtcgatttctttaaaagcaaaaggaaata 25322144  T
Q  539 tat 541  Q
    |||    
T  25322145 tat 25322147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 269 - 396
Target Start/End: Original strand, 25603826 - 25603951
Alignment:
Q  269 tatgacataaaagacagaaatattcaatcaaaa-actgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagaccct 367  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  25603826 tatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatataagatcttttcttcccattcgtacacaatgagtcaagaccct 25603925  T
Q  368 tactactattctcctccaaagactgcacc 396  Q
     |||||   ||||||||||||||||||||    
T  25603926 cactac---tctcctccaaagactgcacc 25603951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 439 - 546
Target Start/End: Original strand, 25604000 - 25604107
Alignment:
Q  439 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtgttgatccttattcactagtcgatttctttaaaagcaaaaggaaaca 538  Q
    ||||||| |||||| ||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |    
T  25604000 gagagggtatacaatatatatggatatagtacacacgatttacatgcttctgtgatgatccttattcactagttgatttctttaaacgcaaaaggaaata 25604099  T
Q  539 tatgaaga 546  Q
    ||| ||||    
T  25604100 tattaaga 25604107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 297 - 396
Target Start/End: Original strand, 25799544 - 25799640
Alignment:
Q  297 caaaaactgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 396  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||   ||||||||||||||||||||    
T  25799544 caaaaactgattacaaagttcagtaatagaagatcttttcttcccattcttacacaatgattcaagaccctcactac---tctcctccaaagactgcacc 25799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 455 - 532
Target Start/End: Original strand, 25799658 - 25799735
Alignment:
Q  455 taaatggatacaatacacacgatttacatgcttctgtgttgatccttattcactagtcgatttctttaaaagcaaaag 532  Q
    |||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  25799658 taaatggatacagtacacaccatttacatgcttctgtgatcatccttattcactagtcgatttctttaaaagcaaaag 25799735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 25385301 - 25385413
Alignment:
Q  21 agaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaaga--tgtcaagagacaaaagcagcaacaac 118  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |  | ||| |||||||| |||||||||||    
T  25385301 agaatcatccaaaggtgaatggaccaccatgcatttgaaatttagtttttctttgtgaatttttgtaaaaaaaatttca-gagacaaaggcagcaacaac 25385399  T
Q  119 tattcatgatatat 132  Q
     || ||||||||||    
T  25385400 aatgcatgatatat 25385413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 25694637 - 25694699
Alignment:
Q  334 ttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 396  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25694637 ttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25694699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 439 - 508
Target Start/End: Original strand, 25646412 - 25646481
Alignment:
Q  439 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtgttgatccttattcact 508  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| |||| |||||||||||||||    
T  25646412 gagaggggatacaacataaatggatatagtacacacgatttacatgcttttgtgatgatccttattcact 25646481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 25321367 - 25321426
Alignment:
Q  17 aactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgt 76  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25321367 aactagaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgt 25321426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 323 - 396
Target Start/End: Original strand, 25321934 - 25322004
Alignment:
Q  323 tagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 396  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  25321934 tagaagatcttttcttcccattcttacacaatgagtcaagaccctcactac---tctcctccaaagactgcacc 25322004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 589
Target Start/End: Original strand, 25799778 - 25799827
Alignment:
Q  540 atgaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25799778 atgaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 25799827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 439 - 507
Target Start/End: Complemental strand, 24913706 - 24913638
Alignment:
Q  439 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtgttgatccttattcac 507  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| |||  ||||||||||||||    
T  24913706 gagaggggatacaacataaatggatagagtacacacgatttacatgcttttgtaatgatccttattcac 24913638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 589
Target Start/End: Original strand, 25322181 - 25322230
Alignment:
Q  540 atgaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 589  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25322181 atgaagacagttgaaaggacaaaccagaagtagcaagacatcaatccaaa 25322230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 25569119 - 25569208
Alignment:
Q  247 ctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatcttttc 336  Q
    ||||||| ||||||||||||| ||||||| | |||| | |||||| |||  ||||| |||||||  ||||||||||||||||||||||||    
T  25569119 ctagtaactagacaccacctggtatgacagagaagaaataaatatgcaacaaaaaaatgattagcaagttcagtaatagaagatcttttc 25569208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 498 - 541
Target Start/End: Original strand, 25385539 - 25385582
Alignment:
Q  498 ccttattcactagtcgatttctttaaaagcaaaaggaaacatat 541  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  25385539 ccttattcactagtcgatttctttaaaagcaaaaggaaatatat 25385582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 25646535 - 25646582
Alignment:
Q  542 gaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 589  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  25646535 gaagacggttgaaaggacaaaccagaagtagcaagacatcaatccaaa 25646582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 543 - 589
Target Start/End: Complemental strand, 24913582 - 24913536
Alignment:
Q  543 aagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 589  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  24913582 aagactgttgaaaggacaaacaggaagtagcaagacatcaatccaaa 24913536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 25603303 - 25603397
Alignment:
Q  68 tttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcatcaaagagtttaattactggaagcaattg 163  Q
    |||||| | ||||||||||||| ||||||  |||||||| || | |||||| || ||||||||||||||  |||||||||||||| |||| |||||    
T  25603303 tttattagcgaatttttgtaaacgatgtcg-gagacaaaggccggaacaacaatgcatgatatatcatcttagagtttaattactagaagaaattg 25603397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 25321889 - 25321937
Alignment:
Q  263 acctgatatgacataaaagacagaaatattcaatcaaaaactgattaga 311  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||    
T  25321889 acctgctatgacataaaaggcagatatattcaaccaaaaactgattaga 25321937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 589
Target Start/End: Original strand, 25604136 - 25604179
Alignment:
Q  546 acagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 589  Q
    |||||||||||||| ||| |||||||||||||||||||| ||||    
T  25604136 acagttgaaaggaccaaccagaagtagcaagacatcaatacaaa 25604179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 25385414 - 25385442
Alignment:
Q  207 aatatatttttgtacttttgacacaagat 235  Q
    |||||||||||||||||||||||||||||    
T  25385414 aatatatttttgtacttttgacacaagat 25385442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 234 - 361
Target Start/End: Complemental strand, 17951 - 17826
Alignment:
Q  234 attatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatctt 333  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| | || ||||||||||||||| ||||||||||||||  |||||    
T  17951 attatgtagcaacctagtaagtagacaccacctgctataacataaaagacaaaaataattaaccaaaaactgattagaaagttcagtaataga--atctt 17854  T
Q  334 ttcttcctattcttacacaatgagtcaa 361  Q
    ||||||| ||||||||||||||||||||    
T  17853 ttcttcccattcttacacaatgagtcaa 17826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 439 - 508
Target Start/End: Complemental strand, 17749 - 17680
Alignment:
Q  439 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtgttgatccttattcact 508  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| || |||  |||||||||||||||    
T  17749 gagaggggatacaacataaatggatacagtacacacgatttacatgtttttgtaatgatccttattcact 17680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 589
Target Start/End: Complemental strand, 17626 - 17579
Alignment:
Q  542 gaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaa 589  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17626 gaagacagttgaaaggacaaacaggaagtagcaagacatcaatccaaa 17579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 18517 - 18458
Alignment:
Q  17 aactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgt 76  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18517 aactaaaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttctttgt 18458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 18389 - 18361
Alignment:
Q  207 aatatatttttgtacttttgacacaagat 235  Q
    |||||||||||||||||||||||||||||    
T  18389 aatatatttttgtacttttgacacaagat 18361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 11191 - 11146
Alignment:
Q  237 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 282  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11191 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 11971279 - 11971234
Alignment:
Q  237 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 282  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11971279 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11971234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University