View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_21 (Length: 422)
Name: NF21440_low_21
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 20631706 - 20631317
Alignment:
| Q |
16 |
atacggggacttggatgcaaactatacaataatcgtatcagtttccaactagaagttaggaaatagccagacagcaaatatacaaacagtcctggaaata |
115 |
Q |
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| T |
20631706 |
atacagggacttgaatgcaaactatacaataatcgaatcagtttccaactagaagttaggaaatagccagacaacaaatatccaaacagtcctggaaata |
20631607 |
T |
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| Q |
116 |
aattccctcaaatgtagaatatgaaacaaccacattgtattatttaaacttaatcaaaatggtgcaggttttgagcttttaagagtcttatgttctttag |
215 |
Q |
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| T |
20631606 |
aattccctcaaatgtagaatatgaaacaaccacattgtattatttaaacttaatcaaaatggtgcaagtttggagcttttaagagtcttatgttctttag |
20631507 |
T |
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| Q |
216 |
ttttaagttatatttgctgttggttcagataccgaatctacgaaaaaacattaataaagatgtctcatatacatattacggtcgtccactccacatagaa |
315 |
Q |
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| T |
20631506 |
ttttaagttatatttgtcgttggttcagataccgaatcta-gaaaaaacattaataaagatgtctcatttatatattacggtcgtccactccacatagaa |
20631408 |
T |
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| Q |
316 |
ccaaaacattgaacgctaaacaataatcacaattataaatacaatcacaattatagtttttcattaattttttgttttccaatgatcaacc |
406 |
Q |
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| T |
20631407 |
ccaaaacattgaacgctaaacaataatcacaattataaatacaatcacaattatagtttttcattaattttttgttttccaatgatcaacc |
20631317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 20608480 - 20608362
Alignment:
| Q |
243 |
gataccgaatctacgaaaaaacattaataaagatgtctcatatacat--attacggtcgtccactccacatagaaccaaaacattgaacgctaaacaata |
340 |
Q |
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| T |
20608480 |
gataccaaatttacgaaaaaacattaataaaaatgtgccatacacgtgtattacagtagtccacacgacatagaaccacaacattgaacactaaacaata |
20608381 |
T |
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| Q |
341 |
atcacaattataaatacaa |
359 |
Q |
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| T |
20608380 |
atcacaattataaatacaa |
20608362 |
T |
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