View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_22 (Length: 419)
Name: NF21440_low_22
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_22 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 37319065 - 37318651
Alignment:
| Q |
1 |
ataaacgatgttacctcgttacctgcataataaagcaactcatttagccctcaaatttagttctcatagtattaattttaggcgttacttttgtgactaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37319065 |
ataaacgatgttacctcgttacctgcataataaagcaactcatttagccctcaaatttagttctcatagtattaattttacgcgttacttttgtgactaa |
37318966 |
T |
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| Q |
101 |
ttgattctataaaaattaatcaaagatgtaaatctatttgatacctacctattcttaacaagtctttatttttgtgattatgttttcaaatgcgacactt |
200 |
Q |
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| T |
37318965 |
ttgattctataaaaattaatcaaagatgtaaatctatttgataccta----ttcttaacaagtctttatttttgtgattatgttttcaaatgtgtcactt |
37318870 |
T |
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| Q |
201 |
caaatttagatcttggcctacatatttgttgggacggattacctgctccaacatggagtcgctcgagtgcaatgagattaaggagcatgtattctgtggt |
300 |
Q |
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| T |
37318869 |
caaatttagatcttggcctacatatttgttgggacggattacctgctccaacatggagtcgctcgagtgcaatgagattaaggagcatgtattctgtggt |
37318770 |
T |
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| Q |
301 |
gtcgtcaatcaccaatgttgggagcctaagaacacctcgatcgaatgaaacatcttttaggctccacgttttgcttatcttgaatcggattccagcctcg |
400 |
Q |
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| T |
37318769 |
gtcgtcaatcaccaatgttgggagcctaagaacacctcgatcgaatgaaacatcttttaggctccacgttttgcttatcttgaatcggattccagcctcg |
37318670 |
T |
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| Q |
401 |
tgaagctctactgcagatc |
419 |
Q |
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| T |
37318669 |
tgaagctctactgcagatc |
37318651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 269 - 399
Target Start/End: Complemental strand, 37283267 - 37283137
Alignment:
| Q |
269 |
gcaatgagattaaggagcatgtattctgtggtgtcgtcaatcaccaatgttgggagcctaagaacacctcgatcgaatgaaacatcttttaggctccacg |
368 |
Q |
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|||||||| ||||||| |||| |||||||| |||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||| | |
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| T |
37283267 |
gcaatgaggttaaggaacatgcattctgtgtggtcgtcaaccaccaattttgggagcctaagaacacctcgattgaaggaaacatctttgaggctccttg |
37283168 |
T |
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| Q |
369 |
ttttgcttatcttgaatcggattccagcctc |
399 |
Q |
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| T |
37283167 |
ttttgcttttcttgaagctgattccagcctc |
37283137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 419
Target Start/End: Complemental strand, 37305480 - 37305375
Alignment:
| Q |
314 |
aatgttgggagcctaagaacacctcgatcgaatgaaacatcttttaggctccacgttttgcttatcttgaatcggattccagcctcgtgaagctctactg |
413 |
Q |
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||||| |||||||||||||||||||||| ||| ||||||||||| ||| || ||||||||| || |||| | ||||||||| || || ||||||| || |
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| T |
37305480 |
aatgtggggagcctaagaacacctcgattgaaggaaacatctttaaggttctttgttttgcttttcatgaagctgattccagcttcatggagctctattg |
37305381 |
T |
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| Q |
414 |
cagatc |
419 |
Q |
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|||||| |
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| T |
37305380 |
cagatc |
37305375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 419
Target Start/End: Complemental strand, 37244838 - 37244658
Alignment:
| Q |
239 |
ttacctgctccaacatggagtcgctcgagtgcaatgagattaaggagcatgtattctgtggtgtcgtcaatcaccaatgttgggagcctaagaacacctc |
338 |
Q |
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||||| |||||||||||||| || |||| ||||||||||||||||| ||||||| |||| |||| || | || | ||||||||||||||||||| |
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| T |
37244838 |
ttaccagctccaacatggagacgttcgaatgcaatgagattaaggaaaatgtattttgtgctgtcatctaatttcacggcagggagcctaagaacacctc |
37244739 |
T |
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| Q |
339 |
gatcgaatgaaacatcttttaggctccacgttttgcttatcttgaatcggattccagcctcgtgaagctctactgcagatc |
419 |
Q |
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| T |
37244738 |
gattgaaggaaacgtctttgaggctccttgaatcgcttttcttgaagcgtactccagcctcttggagctctcttgcagatc |
37244658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 37965417 - 37965348
Alignment:
| Q |
325 |
cctaagaacacctcgatcgaatgaaacatcttttaggctccacgttttgcttatcttgaatcggattcca |
394 |
Q |
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||||||||||||||||||||| |||| |||||| || ||| ||||||||| ||||||| | ||||||| |
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| T |
37965417 |
cctaagaacacctcgatcgaaggaaaaatctttgagactctttgttttgcttttcttgaagctgattcca |
37965348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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