View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_25 (Length: 404)
Name: NF21440_low_25
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Original strand, 32643408 - 32643785
Alignment:
| Q |
11 |
catcatcatggataggtctttgttcgtcacacagactcctatcaccactgatgagcttaacattttttaccaaattgatcgtgagctattttgttttttg |
110 |
Q |
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| T |
32643408 |
catcatcatggataagcctttgtttgtcacacagactcctatcaccactgatgagcttaaccttttttaccaaattgatcgtgagctattttgttttttg |
32643507 |
T |
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| Q |
111 |
atcttcaaacttcaccacgaggtgactcaatctcttctagtcatggctctctggctttggcttgaaaaagttgggtaccataaccttgtctcaaaagtaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643508 |
atcttcaaacttcaccacgaggtgactcaatctcttctagtcatggctctctggctttggcttgaaaaagttgggtaccataaccttgtctcaaaagtaa |
32643607 |
T |
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| Q |
211 |
cagttctacaaggcactgttatcaatgctcttgtgaatgaagctgtaacatgcttgcaaattttgggaaaggatgaacctgccatcccaattgggggtgg |
310 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643608 |
cacttctacaaggcactgttatcaatgctcttgtgaatgaagctgtaacttgcttgcaaattttgggaaaggatgaacctgccatcccaattgggggtgg |
32643707 |
T |
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| Q |
311 |
attgcccttgactacaaggctcgtgaaaaaggacatctctcttcagatgttcatcttgaaacggtacacggcaataac |
388 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
32643708 |
attgcccttgaccacaaggctcgtgaaaaaggacatctctcttcagatgttcatcttgaaaaggcacacggcaataac |
32643785 |
T |
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