View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_27 (Length: 399)
Name: NF21440_low_27
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 41735933 - 41735642
Alignment:
| Q |
17 |
atttattcagttggtgagttttt-acttatgcaactcattcaagttttatcccttctctcatactcaacaataatgtcttaaccggcttaaacaaactat |
115 |
Q |
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| T |
41735933 |
atttattcagttggtgagttttttacttatgcaactcattcaagttttttcccttctctcatactcaacaataatgtcttaaccggcttaaacaaactat |
41735834 |
T |
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| Q |
116 |
tttaagatgattttaaagttctaattggcttaaacaattcatagttatctaatgcataacattagtttgatttggatgataactcgtattgataaataaa |
215 |
Q |
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| T |
41735833 |
tttaagatgattttaaacttctaattggcttaaacaattcatagttatctaatgcataacattagtttgatttggatgataactcgtattgataaataaa |
41735734 |
T |
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| Q |
216 |
attgacctacaataattatgtatgttagnnnnnnnactcagtaactcaatcaacttttcaccattctctcgtgtttaacgacataaatacca |
307 |
Q |
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| T |
41735733 |
attgacctacaataattttgtatgttagtttttttacttagtaactcaatcaacttttcaccattctctcatgtttaacgacataaatacca |
41735642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 41735655 - 41735586
Alignment:
| Q |
325 |
cgacataaataccactaattcgatccaattttcataatcaaaccattcatcatagattcatagctttcat |
394 |
Q |
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| T |
41735655 |
cgacataaataccactaattcgatccaattttcataatcaaaccattcatcatagattcatagctttcat |
41735586 |
T |
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