View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_28 (Length: 394)
Name: NF21440_low_28
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 25792611 - 25792228
Alignment:
| Q |
18 |
aggaattcatattttttggtaacatttttggtaatattctttcttcaggttgaatcaattaagaagatatcagagtatgtgtctcaattgagaagggttg |
117 |
Q |
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| T |
25792611 |
aggaattcatattttttggtaacatttttggtaatattctttcatcaggttgaatcaattaagaagatatcagagtatgtgtctcaattgagaagggttg |
25792512 |
T |
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| Q |
118 |
gaaagggtcatggtatgtatataactacaatcatatttcatattggtccacatactttgccatacacataacacctatcgattagtatatagcaccgaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
25792511 |
gaaagggtcatggtatgtatataactacaatcatatttcatattggtccacatattttgccatacacataacacctatcaattagtatgtagcaccgaca |
25792412 |
T |
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| Q |
218 |
cttcacattaaagatgggtctggtgtccgacacatgtcaatgtttga-------------------ttactttcaatcactgattcacttatattttctt |
298 |
Q |
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| T |
25792411 |
cttcacattaaa-atgtgtctggtgtccgacacatgtcaatgtctgatattgacacgtgtgcgtggttactttcaatcactgattcacttatattttctt |
25792313 |
T |
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| Q |
299 |
aaattactatcggtgtctaaatgtatgtgttgtatccggtgttcgtatgtggtggacactcttt-agttctaatgaaatttatat |
382 |
Q |
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| T |
25792312 |
aaattactatcagtgtctaaatgtatgtgttgtatccggtgttcgtatgtggtggacactctttaagttctaatgaaatttatat |
25792228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 4113221 - 4113297
Alignment:
| Q |
63 |
caggttgaatcaattaagaagatatcagagtatgtgtctcaattgagaagggttggaaagggtcatggtatgtatat |
139 |
Q |
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| T |
4113221 |
caggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgtatat |
4113297 |
T |
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