View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_30 (Length: 371)
Name: NF21440_low_30
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 1200060 - 1200411
Alignment:
| Q |
14 |
gcggaatgtgccgtaagaatgccgaaatagcaaatgcaaatgctgttaaagaag---aagaagacattttccacaccaagatccctgaaccagtgataac |
110 |
Q |
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| T |
1200060 |
gcggaatgtgccttaagaatgccgaaatagcaaatgcaaatgctgttaaagaagcagaagaagacatattccacaccaagatccctgaaccagtgataac |
1200159 |
T |
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| Q |
111 |
tcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaagctctcctta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
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| T |
1200160 |
tcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggactttcctcaccaaactctcctta |
1200259 |
T |
|
| Q |
211 |
cac-----tcgtcaaaatgatttaatcaatgatcaatttgttaggcttcgaagaacacgaaactttgttaggtttgttgatagagccctgattcatactg |
305 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200260 |
cacgatcatcgtcaaaatgatttaatcaatgatcaacttgttaggcttcgaagaacacgaaactttgttaggtttgttgatagagccctgattcatactg |
1200359 |
T |
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| Q |
306 |
atggtataatcctggacagcttt--tcttttcctctttggaaggtatgaaac |
355 |
Q |
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| T |
1200360 |
atggtataatcctggacagcttttctcttttcctctttggaaggtatgaaac |
1200411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 1213484 - 1213591
Alignment:
| Q |
106 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaagctct |
205 |
Q |
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| T |
1213484 |
ataactcacattctctcttttctcccaaccaaagacgctgttcgcacttctatcttatctaagagttgggaacaccgctggacttcactcaccaaactct |
1213583 |
T |
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| Q |
206 |
ccttacac |
213 |
Q |
| |
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| |||||| |
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| T |
1213584 |
ctttacac |
1213591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 579952 - 580070
Alignment:
| Q |
94 |
cctgaaccagtgataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttccc |
193 |
Q |
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||||||||||||||||||||||||||| |||| | ||||||||||| || ||||||| || |||||||||||| |||||||| |||||||||||| |
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| T |
579952 |
cctgaaccagtgataactcacattctcagtttcgtaccaaccaaagatgctattcgcacctccatcttatccaaaaaatgggaacgtcgttggacttcca |
580051 |
T |
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| Q |
194 |
ttaccaagctctccttaca |
212 |
Q |
| |
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| T |
580052 |
tcaccaaactctccttaca |
580070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 1079027 - 1079132
Alignment:
| Q |
106 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaagctct |
205 |
Q |
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||||||||||| ||||||| || ||||||||||| || |||||||||| ||||||||| ||| |||| ||||||||||||||| ||||||||| |||| |
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| T |
1079027 |
ataactcacatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactct |
1079126 |
T |
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| Q |
206 |
ccttac |
211 |
Q |
| |
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|||||| |
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| T |
1079127 |
ccttac |
1079132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 5132779 - 5132674
Alignment:
| Q |
106 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaagctct |
205 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||| || |||||||||| ||||||||| ||| |||| ||||||||||||||| ||||||||| |||| |
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| T |
5132779 |
ataactcacatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactct |
5132680 |
T |
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| Q |
206 |
ccttac |
211 |
Q |
| |
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|||||| |
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| T |
5132679 |
ccttac |
5132674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 8193444 - 8193298
Alignment:
| Q |
67 |
gaagaagacattttccacaccaagatccctgaaccagtgataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatcca |
166 |
Q |
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||||| ||||| ||| ||| |||| ||||||||| | | |||||||||||||||||||| ||||| || |||| || ||||| ||| | | ||||||| |
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| T |
8193444 |
gaagatgacatattctacaacaagctccctgaacaactaataactcacattctctcttttcttccgacggaagatgctgttcgtgcttttcttttatcca |
8193345 |
T |
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| Q |
167 |
aaacatgggaacaccgttggacttcccttaccaagctctccttacac |
213 |
Q |
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||| |||| || ||||||| ||||||| || || |||||| ||||| |
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| T |
8193344 |
aaaaatggaaaacccgttggtcttccctcactaaactctccatacac |
8193298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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